Non-Coding RNA Search

Ss1.1-rpfco0120_p12.5.5

Sequence:


               
               AGAGTTCTGAGGACCGGGGCTGGCGAGGCTCACGCCGGGGTGCTTCGCTTTTGCGGAAAG
CTGTTTGGCAGCTGGTGGCAGAGAGGGTACTGGTGACCATGAGATCTCTGTGGCTGCTCT
TCCTGTGGGGCCTGCTCTGGACCTTTTGTGCCTCGGGGGCCAGGGCCAAGGAGCCCGGTG
CCAGCTTCTCGCATCCCGGCAGCGTGGGCCTGGATAAGAACACAGTGCACGACCAACAGC
ATATCATGGAGCATCTAGAAGGTGTCATCAACAAACCAGAGGCGGAGATGTCCCCACAAG
AACTGCAGCTCCATTACTTCAAAATGCATGATTATGACGGCAATAATTTGCTCGATGGCC
TGGAACTCTCCACAGCCATCACTCATGTCCATAAGGAGGAAGGGAATGAGCAGGCACCAA
TGAGTGAAGATGAACTGATCAACCTAATAGATGGTGTCTTGAGAGATGATGACAAGAACA
ACGACGGATACATCGACTATGCCGAGTTCGCAAAATCACTGCAATAGGCATAATGTGGCG
ATCTCCTAGTCTGATGCAAATGTGACCCGTTATAATGTGATCACACACTTTCGATAATGC
AAGATAACTCCTTTCGAAAATACTGCAGTAGCAGTATTTGTAAAAACCTGTAGCAGTTTG
TTACACTGGTGTGAGAAAGAGAATTCAAGAGAAATTAAAGAGCGGAGAAATGGGACACAC
TGTAGTCCCCAAGTACTGTTAAATCTCTCACTGGACAAGGGCTTGATTATGAAGAATTCT
TTTAAGAAAATTGGATGAGGGGAGCTGAGCACTCAGGAATGTGACTGAATAATACTGCCA
GGATCTTGGTTTTAATGCAGGCTGTCTGAAAACAGGACCAGGTCTGCTAACTGGACATAC
TTTTCAGTAACAATGAAGGGACGGAATGAATGCCAAGTGTTTCCCCTAGTGGGTCATGTC
TCTTCAGGGAAAGGTGGTGAGTGTTCTGTGAAGTGCCTCTGGCCTAGATGCTTCCTTGTT
CTGGCCAAGGAAGTATTTATTAAGCTATTTCCAAGCCACAGCATCAGAAGAATGTCAAAG
ACTGGGTTCAGTCAGCCACCGAGTCTGAGATTCTGTATCTCCTGGCACTTTGGAAACAGT
ACACCACTGACCGACGTGAGTCACTTTTTTAGTTTTTCACTCTTTTATAGAACTACTGCC
ACATCCTGACACCTTCTTGTGTCTTCTTCAGCCTAGGAGAGACTTCAAATCTAAAAGCAT
TCTCTACTTCTAACCATTAGCAAATGTTTTAGCTTTTGAAGGATTTGTCTTTAACTCTTG
TTTCTAGGGTTTTTGTTTTTGCAGTTTAGAAAGTCTTAGGAATGTAAGGACTTTATCCTT
TCTGCTTGATACAGCAGGGGCGCCCTACTAGCTGGTCCAGCTTAAGTGATAGGTGAAAAG
ATGCTTCACCAAGCATGGTGATTAACCTGATACAAGTTACATTTAGAAGGCATGTTGGGG
AGTTCCCATCGTGGCTGAGCAGAAACAAATCTGACTAGTACCTATGAGGATGCCGGGTCC
ATCCCTGACCTTGCTCAGTGGGGTAAGGATCCGGCATTGCGTGAGCTGTAGTATAGGTCA
TAGACACGGCTCGGATCCTGCTTTGCTGTGGCTCTGGTGTAGGCCAGTGACTGCAGCTCC
GATTAGACCCCCAGCCTGGGAACCTCCAAATGCCGCAGGTGCGGCCCAAAAAGAAACAAA
AACAAAGACAAGAAGGAATGTTTTTAAATTACCTCTTCTAGTCTAGATACATTAATTCTT
TCAGATCAGGACAGATTAGCAGTGTGAATCTCAATAATTGCAAATGAGAAGCAGCAGTGA
ATTACAGATGTATTTATGGGATGTGATGGACATGTCTGTGATGGGAAACCTGAAATAATA
GCTGAATGGGAAAAAAACGGCATACAGTTTGCTGTAAGATATATAGAGACTTATTTTCTG
TATTAAAGTATTCTTATAAGAAAAATAAGTATTTGTAAAAATGGTTTCCTGTGTCAAGTA
TTTGTGCAATCAGAGCTGAATTGTAAACTATTCTTATAATATCTAGTTATTTTGAAAGAT
TTATATAATGAATTCTGGATATATGACCAATAAAAGTGATGAAAGTTGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGTTCTGAGGACCGGGGCTGGCGAGGCTCACGCCGGGGTGCTTCGCTTTTGCGGAAAG
CTGTTTGGCAGCTGGTGGCAGAGAGGGTACTGGTGACCATGAGATCTCTGTGGCTGCTCT
TCCTGTGGGGCCTGCTCTGGACCTTTTGTGCCTCGGGGGCCAGGGCCAAGGAGCCCGGTG
CCAGCTTCTCGCATCCCGGCAGCGTGGGCCTGGATAAGAACACAGTGCACGACCAACAGC
ATATCATGGAGCATCTAGAAGGTGTCATCAACAAACCAGAGGCGGAGATGTCCCCACAAG
AACTGCAGCTCCATTACTTCAAAATGCATGATTATGACGGCAATAATTTGCTCGATGGCC
TGGAACTCTCCACAGCCATCACTCATGTCCATAAGGAGGAAGGGAATGAGCAGGCACCAA
TGAGTGAAGATGAACTGATCAACCTAATAGATGGTGTCTTGAGAGATGATGACAAGAACA
ACGACGGATACATCGACTATGCCGAGTTCGCAAAATCACTGCAATAGGCATAATGTGGCG
ATCTCCTAGTCTGATGCAAATGTGACCCGTTATAATGTGATCACACACTTTCGATAATGC
AAGATAACTCCTTTCGAAAATACTGCAGTAGCAGTATTTGTAAAAACCTGTAGCAGTTTG
TTACACTGGTGTGAGAAAGAGAATTCAAGAGAAATTAAAGAGCGGAGAAATGGGACACAC
TGTAGTCCCCAAGTACTGTTAAATCTCTCACTGGACAAGGGCTTGATTATGAAGAATTCT
TTTAAGAAAATTGGATGAGGGGAGCTGAGCACTCAGGAATGTGACTGAATAATACTGCCA
GGATCTTGGTTTTAATGCAGGCTGTCTGAAAACAGGACCAGGTCTGCTAACTGGACATAC
TTTTCAGTAACAATGAAGGGACGGAATGAATGCCAAGTGTTTCCCCTAGTGGGTCATGTC
TCTTCAGGGAAAGGTGGTGAGTGTTCTGTGAAGTGCCTCTGGCCTAGATGCTTCCTTGTT
CTGGCCAAGGAAGTATTTATTAAGCTATTTCCAAGCCACAGCATCAGAAGAATGTCAAAG
ACTGGGTTCAGTCAGCCACCGAGTCTGAGATTCTGTATCTCCTGGCACTTTGGAAACAGT
ACACCACTGACCGACGTGAGTCACTTTTTTAGTTTTTCACTCTTTTATAGAACTACTGCC
ACATCCTGACACCTTCTTGTGTCTTCTTCAGCCTAGGAGAGACTTCAAATCTAAAAGCAT
TCTCTACTTCTAACCATTAGCAAATGTTTTAGCTTTTGAAGGATTTGTCTTTAACTCTTG
TTTCTAGGGTTTTTGTTTTTGCAGTTTAGAAAGTCTTAGGAATGTAAGGACTTTATCCTT
TCTGCTTGATACAGCAGGGGCGCCCTACTAGCTGGTCCAGCTTAAGTGATAGGTGAAAAG
ATGCTTCACCAAGCATGGTGATTAACCTGATACAAGTTACATTTAGAAGGCATGTTGGGG
AGTTCCCATCGTGGCTGAGCAGAAACAAATCTGACTAGTACCTATGAGGATGCCGGGTCC
ATCCCTGACCTTGCTCAGTGGGGTAAGGATCCGGCATTGCGTGAGCTGTAGTATAGGTCA
TAGACACGGCTCGGATCCTGCTTTGCTGTGGCTCTGGTGTAGGCCAGTGACTGCAGCTCC
GATTAGACCCCCAGCCTGGGAACCTCCAAATGCCGCAGGTGCGGCCCAAAAAGAAACAAA
AACAAAGACAAGAAGGAATGTTTTTAAATTACCTCTTCTAGTCTAGATACATTAATTCTT
TCAGATCAGGACAGATTAGCAGTGTGAATCTCAATAATTGCAAATGAGAAGCAGCAGTGA
ATTACAGATGTATTTATGGGATGTGATGGACATGTCTGTGATGGGAAACCTGAAATAATA
GCTGAATGGGAAAAAAACGGCATACAGTTTGCTGTAAGATATATAGAGACTTATTTTCTG
TATTAAAGTATTCTTATAAGAAAAATAAGTATTTGTAAAAATGGTTTCCTGTGTCAAGTA
TTTGTGCAATCAGAGCTGAATTGTAAACTATTCTTATAATATCTAGTTATTTTGAAAGAT
TTATATAATGAATTCTGGATATATGACCAATAAAAGTGATGAAAGTTGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|51476793|emb|CAH18359.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|51476793|emb|CAH18359.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               922-1103, - strand, RNAz p=0.853655

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               922-1103, - strand, RNAz p=0.853655

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               12-1497, gnl|bosTau2|chr11 (24283712-24285201)
               

               
               12-1497, gnl|Hg17|chr2 (47047968-47041079)
               

               
               12-1497, gnl|Mm7|chr17 (85560525-85557508)
               


               
               1751-2164, gnl|bosTau2|chr11 (24285189-24285622)
               

               
               1751-2164, gnl|Hg17|chr2 (47041091-47040664)
               

               
               1751-2164, gnl|Mm7|chr17 (85557520-85557106)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-1497, gnl|bosTau2|chr11 (24283712-24285201)
               

               
               12-1497, gnl|Hg17|chr2 (47047968-47041079)
               

               
               12-1497, gnl|Mm7|chr17 (85560525-85557508)
               


               
               1751-2164, gnl|bosTau2|chr11 (24285189-24285622)
               

               
               1751-2164, gnl|Hg17|chr2 (47041091-47040664)
               

               
               1751-2164, gnl|Mm7|chr17 (85557520-85557106)

Expressed library(ies): 35 entry(ies)

More info

Expressed library(ies): 35 entry(ies)

Help | Less info


               
               sag (2.92344)
               

               
               mga (0.64082)
               

               
               bfe (0.449573)
               

               
               hea (0.408998)
               

               
               che (0.408942)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               sug (0.381874)
               

               
               cmu (0.372787)
               

               
               mgm (0.360685)
               

               
               vin (0.332557)
               

               
               cje (0.330469)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               lyg (0.266205)
               

               
               med (0.232504)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 35 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (2.92344)
               

               
               mga (0.64082)
               

               
               bfe (0.449573)
               

               
               hea (0.408998)
               

               
               che (0.408942)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               sug (0.381874)
               

               
               cmu (0.372787)
               

               
               mgm (0.360685)
               

               
               vin (0.332557)
               

               
               cje (0.330469)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               lyg (0.266205)
               

               
               med (0.232504)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	12-1497, gnl\|bosTau2\|chr11 (24283712-24285201)
	12-1497, gnl\|Hg17\|chr2 (47047968-47041079)
	12-1497, gnl\|Mm7\|chr17 (85560525-85557508)

	1751-2164, gnl\|bosTau2\|chr11 (24285189-24285622)
	1751-2164, gnl\|Hg17\|chr2 (47041091-47040664)
	1751-2164, gnl\|Mm7\|chr17 (85557520-85557106)

	sag (2.92344)
	mga (0.64082)
	bfe (0.449573)
	hea (0.408998)
	che (0.408942)
	aor (0.390549)
	kid (0.389206)
	sug (0.381874)
	cmu (0.372787)
	mgm (0.360685)
	vin (0.332557)
	cje (0.330469)
	fco (0.314416)
	cte (0.29274)
	lyg (0.266205)
	med (0.232504)
	sto (0.179824)
	ton (0.1755)
	rec (0.17307)
	mcp (0.170648)
	cki (0.165235)
	tbr (0.154178)
	cag (0.151194)
	fat (0.147427)
	spl (0.143184)
	nmm (0.132802)
	bla (0.124347)
	tra (0.123092)
	eep (0.122564)
	eru (0.120048)
	pgl (0.118483)
	spc (0.113366)
	nbm (0.0993246)
	jej (0.0989218)
	ldo (0.0970026)