Non-Coding RNA Search

Ss1.1-rpfco0123_d1.5

Sequence:


               
               GGATTAGGGTTATTGTAAAAGGAGGTTTGAGACTAGGAATAGAAAATTCTGTGATAGTGT
CTGTTCTATTGAGTGACTTACTGTTGCCTTTGTTCCCTTACTTTATTGAAAACTGTTCTC
TTAAGCATGCAGTAGGAAAAATGTACATTTCAGCCTCTTTGAACTAAAGTTATTTATTGT
GGAAATACATCACTTTTTTTGTATAAACATTTTAGTTTATTGGGGATTTGGGCTTAGTAA
CAAATAAGATCTTGCTGTTAATACTAAGTTAGGGTACATGTATTCTGTAAAGTGATGGTT
ACCTGAATATCTACTTCTGTTACCAGGTAGCACTGCTCGATATTGCTTTGTTATTTTATT
GAGTGTATGTTGGCTTTATAACAAGTAAGTTCCTAAGAAGGGCATTTTCATGTCCTCCTT
TTAGTTTCTCTAGTTGGACTCACTAACTATTTGACAGACTTAGAACTTAAGTGTGGAGAA
GGTAAATAATTGAATTTTACATCATTTTACAGTATTTCATATTTAGGAAGACAGCAAACC
ATATACATGTATGTAGTTGTATAGCTCTGAAGTACCTTTAAAACTTATAGGTGTGTAAAA
TGTAATACTCGTTAAATGTAAATATCATATTCAGTGAAGAGTATGTTCATTTTAAAAGAG
TCTTCAAGTGATAGTGTGTTTTGAACAAAAAGGAACTTGAAAATAAAAGCAAGATCGATG
AATTTGTTAGTTTGAATGATAATAAATGTAATATAAATGTAAACATATTGATGTGATTTA
TACCTAAATAAAAGTTTTTGCCTTCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTAGGGTTATTGTAAAAGGAGGTTTGAGACTAGGAATAGAAAATTCTGTGATAGTGT
CTGTTCTATTGAGTGACTTACTGTTGCCTTTGTTCCCTTACTTTATTGAAAACTGTTCTC
TTAAGCATGCAGTAGGAAAAATGTACATTTCAGCCTCTTTGAACTAAAGTTATTTATTGT
GGAAATACATCACTTTTTTTGTATAAACATTTTAGTTTATTGGGGATTTGGGCTTAGTAA
CAAATAAGATCTTGCTGTTAATACTAAGTTAGGGTACATGTATTCTGTAAAGTGATGGTT
ACCTGAATATCTACTTCTGTTACCAGGTAGCACTGCTCGATATTGCTTTGTTATTTTATT
GAGTGTATGTTGGCTTTATAACAAGTAAGTTCCTAAGAAGGGCATTTTCATGTCCTCCTT
TTAGTTTCTCTAGTTGGACTCACTAACTATTTGACAGACTTAGAACTTAAGTGTGGAGAA
GGTAAATAATTGAATTTTACATCATTTTACAGTATTTCATATTTAGGAAGACAGCAAACC
ATATACATGTATGTAGTTGTATAGCTCTGAAGTACCTTTAAAACTTATAGGTGTGTAAAA
TGTAATACTCGTTAAATGTAAATATCATATTCAGTGAAGAGTATGTTCATTTTAAAAGAG
TCTTCAAGTGATAGTGTGTTTTGAACAAAAAGGAACTTGAAAATAAAAGCAAGATCGATG
AATTTGTTAGTTTGAATGATAATAAATGTAATATAAATGTAAACATATTGATGTGATTTA
TACCTAAATAAAAGTTTTTGCCTTCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               259-378, - strand, RNAz p=0.918356
               

               
               416-530, + strand, RNAz p=0.944268

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-378, - strand, RNAz p=0.918356
               

               
               416-530, + strand, RNAz p=0.944268

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               101-798, gnl|bosTau2|chr1 (52698022-52698722)
               

               
               101-798, gnl|Hg17|chr3 (182157336-182157959)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-798, gnl|bosTau2|chr1 (52698022-52698722)
               

               
               101-798, gnl|Hg17|chr3 (182157336-182157959)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fco (0.314416)
               

               
               cbe (0.239234)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               cbe (0.239234)

	259-378, - strand, RNAz p=0.918356
	416-530, + strand, RNAz p=0.944268

	101-798, gnl\|bosTau2\|chr1 (52698022-52698722)
	101-798, gnl\|Hg17\|chr3 (182157336-182157959)