Non-Coding RNA Search

Ss1.1-rpfco0123_o20.5

Sequence:


               
               GGAAAAGATGTGTTGCACCAATAAATGGTGTTATTTCTATGCAAACCCACTAACAATAAG
TTTGTACTGTTGCACAATTTTAATAAAAGTTCAGAAAGATTAGCATTGCTCTCTGAGTTG
GTTAAATGGATTTCAGAAGCCTAATTCCTAAATCATACTTACAAGTTGATGTCAGTTAAC
ACATCTTCAAATGTAAATTCCATTTTGTTAAACTATGAAGAATTGTAGTGCATGAAGAAT
AGCAGTGTGAGGTAGAAACACAGTCCATTACTCTGATATTTTGGATGCAGTTTTCAGAAA
AAAAAGTGGACAGTTCAAATATGGACATATAAGGTGAAAAATTATCCCCCCCATGCTTCA
GTTTTCATTTACTTTAAAAAAATAACTGACTTATATATAAATATATTTATAGCCTGAGTA
AAGTTTAAAGAATGTGAAATATACTTCAAGCCCTTAAAACAATACACATGCATTTAATAT
TTCCTTTGATATTATACATGAAAGCAGTATTTTAGAGTGTGTTAGTTGAAATAAAACCAA
GTAAACTGGAACAGCTCATTTTATAGTATCTTCTTGCATATGTACACTTAAGTGTAACTT
CATTATTTTTAAAATGATCTTAGTTCTTCACCATGTTATTTCATGTTAATTTAATTTTTG
CTAATTAACTGAAACTTACTTTCCAGATTCACCCTGTTCCAGCTTCTATAAGAGATACAA
TTTGAAGTCTATGAAAAGTGAAAGAAGAATTATAAATACCATTGTACATAGCATGTCTAT
ATCCACAGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAAGATGTGTTGCACCAATAAATGGTGTTATTTCTATGCAAACCCACTAACAATAAG
TTTGTACTGTTGCACAATTTTAATAAAAGTTCAGAAAGATTAGCATTGCTCTCTGAGTTG
GTTAAATGGATTTCAGAAGCCTAATTCCTAAATCATACTTACAAGTTGATGTCAGTTAAC
ACATCTTCAAATGTAAATTCCATTTTGTTAAACTATGAAGAATTGTAGTGCATGAAGAAT
AGCAGTGTGAGGTAGAAACACAGTCCATTACTCTGATATTTTGGATGCAGTTTTCAGAAA
AAAAAGTGGACAGTTCAAATATGGACATATAAGGTGAAAAATTATCCCCCCCATGCTTCA
GTTTTCATTTACTTTAAAAAAATAACTGACTTATATATAAATATATTTATAGCCTGAGTA
AAGTTTAAAGAATGTGAAATATACTTCAAGCCCTTAAAACAATACACATGCATTTAATAT
TTCCTTTGATATTATACATGAAAGCAGTATTTTAGAGTGTGTTAGTTGAAATAAAACCAA
GTAAACTGGAACAGCTCATTTTATAGTATCTTCTTGCATATGTACACTTAAGTGTAACTT
CATTATTTTTAAAATGATCTTAGTTCTTCACCATGTTATTTCATGTTAATTTAATTTTTG
CTAATTAACTGAAACTTACTTTCCAGATTCACCCTGTTCCAGCTTCTATAAGAGATACAA
TTTGAAGTCTATGAAAAGTGAAAGAAGAATTATAAATACCATTGTACATAGCATGTCTAT
ATCCACAGTAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-792, gnl|bosTau2|chr14 (35714433-35713644)
               

               
               1-792, gnl|Hg17|chr8 (108332843-108332051)
               

               
               1-792, gnl|Mm7|chr15 (42434585-42433828)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-792, gnl|bosTau2|chr14 (35714433-35713644)
               

               
               1-792, gnl|Hg17|chr8 (108332843-108332051)
               

               
               1-792, gnl|Mm7|chr15 (42434585-42433828)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)

	1-792, gnl\|bosTau2\|chr14 (35714433-35713644)
	1-792, gnl\|Hg17\|chr8 (108332843-108332051)
	1-792, gnl\|Mm7\|chr15 (42434585-42433828)