Non-Coding RNA Search

Ss1.1-rpfco0124_a2.5

Sequence:


               
               GGCCTGCTCAATGGACCGATTTCCCCGCTTTTCTTGATCCCAACCCAGCCCGGGTATGAG
AAATTGCAAAATGGCCCGGGTTGCCAGCGTGCTGGGGCTGGTCATGCTCAGCGTCGCCCT
GCTGATTTTATCGCTCATCAGCTACGTGTCCCTGAAAAAGGAGAACATCTTCACCACTCC
CAAGTACGCCAACCCGGGGGCGCCCCGAATGTACATGTTCCACGCAGGATTCCGGTCACA
ATTTGCGCTGAAGTTTCTAGATCCGTCATTTGTGCCCTTTCCGCATTCTCTGACTCACGA
ACTCCAAGACAGACCTAAGTGGACATTTAATCGGACAGCGTTTTTACATCAAAGAACAAC
TTGCTTATAGCCTGGGCACAAAGTAGGCCTTCATCCTCTGGCTTTTCTGGACACCAAAGA
GTGTGATGGCCGTTCTCCAGAAACTCTACACGGAGAAATGAGAAATACATAAATAAGAGG
CTTGGCCTTGTCTTCTTAAGAACAGGCTCCTTCTCTTCCATTTCATTTAACTTCAGAGCA
ATAAGGGCAGTGTGTGCCACTTGGTAGATGCTTTTCCCTGACTTTCAAGATACGGACCAA
TAATACCAGGCCTTGGCACCCTACAAATATCAGTGCCACTGCACACTGGAAAAATATAAC
CATCGATCATCGAAGCACTAGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTGCTCAATGGACCGATTTCCCCGCTTTTCTTGATCCCAACCCAGCCCGGGTATGAG
AAATTGCAAAATGGCCCGGGTTGCCAGCGTGCTGGGGCTGGTCATGCTCAGCGTCGCCCT
GCTGATTTTATCGCTCATCAGCTACGTGTCCCTGAAAAAGGAGAACATCTTCACCACTCC
CAAGTACGCCAACCCGGGGGCGCCCCGAATGTACATGTTCCACGCAGGATTCCGGTCACA
ATTTGCGCTGAAGTTTCTAGATCCGTCATTTGTGCCCTTTCCGCATTCTCTGACTCACGA
ACTCCAAGACAGACCTAAGTGGACATTTAATCGGACAGCGTTTTTACATCAAAGAACAAC
TTGCTTATAGCCTGGGCACAAAGTAGGCCTTCATCCTCTGGCTTTTCTGGACACCAAAGA
GTGTGATGGCCGTTCTCCAGAAACTCTACACGGAGAAATGAGAAATACATAAATAAGAGG
CTTGGCCTTGTCTTCTTAAGAACAGGCTCCTTCTCTTCCATTTCATTTAACTTCAGAGCA
ATAAGGGCAGTGTGTGCCACTTGGTAGATGCTTTTCCCTGACTTTCAAGATACGGACCAA
TAATACCAGGCCTTGGCACCCTACAAATATCAGTGCCACTGCACACTGGAAAAATATAAC
CATCGATCATCGAAGCACTAGGGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-236, gnl|bosTau2|chr24 (43330272-43330039)
               

               
               1-236, gnl|Hg17|chr18 (53171023-53171256)
               

               
               1-236, gnl|Mm7|chr18 (64653832-64654065)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-236, gnl|bosTau2|chr24 (43330272-43330039)
               

               
               1-236, gnl|Hg17|chr18 (53171023-53171256)
               

               
               1-236, gnl|Mm7|chr18 (64653832-64654065)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fco (0.157208)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               eje (0.0988338)

	1-236, gnl\|bosTau2\|chr24 (43330272-43330039)
	1-236, gnl\|Hg17\|chr18 (53171023-53171256)
	1-236, gnl\|Mm7\|chr18 (64653832-64654065)