Non-Coding RNA Search

Ss1.1-rpfco0124_d8.5

Sequence:


               
               TTCAAAAGTTAACAAATTGAGAAGATTGGAAAGTTGTTCCATAAGCTGCCAGGTTCTGAA
AGTTCTAAAGATACAAATATGTTGGAAATTAACAATCTCTAAAAAAAATGCAGTTGCTGT
TTACCTAAAAATCCACTGGAGGTCATTGCTGCCTACCAATATTAACTGAAAACAGCATGT
ATTTCAGTAAAAGCCTGCCTGGTGTGGGGAAATAAAACTATAACCCCAAATCACAGGGTC
CTTAGCAAAGTTGATGTCTGAAATAGATTTGGAGATGTGTTAACTAGGAAGATTACAATT
TAACTGGATCTTACTTTATGATTTGTGAGGTCTCTTCCGTGTCTAACATTCTACATTACT
GATTTTTTCTTTCGTGTTTTTCACTGAATATTTCAGTGCAATGCTGTCAGCTTAGAAAAA
CAGGGATTAAAAATAGAAGTGAACATTAATGAGAGCTCTAGAAAAAAAAGAGAACAGGAA
GTCTTTGCCTGCTTACTAAGTGGCAATTCCATACATATTTTAGAGTTTTTTCCTTCCTAA
ATTAGTTCAGTACTTAGGATGTTTTTATCGAGTGTTAAATATTTGCTATAGGGTGTAGGG
TTTTGTAAATTTTCATAGTGATTATGAACATTGTAAAATTTGTAAAATACAGTAAGTTGT
TTTGAGTGTTGGTGTTGAAGCATGAAACAAACGCAGCAGTTGTTATCCTTAAAATGGATT
ATCTTCAGCCTGACAAATAAATTTAAGACATTACCTAGCATTGTATAGTTGTTGAGGTCC
CAGGAGAAAGTACCACAGTCATGATGACAATAAGGAGTCAGTGTTCTTTTTCTTAGAGCA
GAATATCACACTGCGTTACTTCTTCAAAAGCAGTGCTTATTTTTCACGCCAGCTGTTACA
TTTGAATCAGATATAAATAAGAGATTTTCCATGAACACTTTTGATCATAGTGTGTTATTT
AAGCTGGTATGTTTATTTTATTTTTCTTGGGAAAATAGCATTATATTTTGGCTTTCATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAAAAGTTAACAAATTGAGAAGATTGGAAAGTTGTTCCATAAGCTGCCAGGTTCTGAA
AGTTCTAAAGATACAAATATGTTGGAAATTAACAATCTCTAAAAAAAATGCAGTTGCTGT
TTACCTAAAAATCCACTGGAGGTCATTGCTGCCTACCAATATTAACTGAAAACAGCATGT
ATTTCAGTAAAAGCCTGCCTGGTGTGGGGAAATAAAACTATAACCCCAAATCACAGGGTC
CTTAGCAAAGTTGATGTCTGAAATAGATTTGGAGATGTGTTAACTAGGAAGATTACAATT
TAACTGGATCTTACTTTATGATTTGTGAGGTCTCTTCCGTGTCTAACATTCTACATTACT
GATTTTTTCTTTCGTGTTTTTCACTGAATATTTCAGTGCAATGCTGTCAGCTTAGAAAAA
CAGGGATTAAAAATAGAAGTGAACATTAATGAGAGCTCTAGAAAAAAAAGAGAACAGGAA
GTCTTTGCCTGCTTACTAAGTGGCAATTCCATACATATTTTAGAGTTTTTTCCTTCCTAA
ATTAGTTCAGTACTTAGGATGTTTTTATCGAGTGTTAAATATTTGCTATAGGGTGTAGGG
TTTTGTAAATTTTCATAGTGATTATGAACATTGTAAAATTTGTAAAATACAGTAAGTTGT
TTTGAGTGTTGGTGTTGAAGCATGAAACAAACGCAGCAGTTGTTATCCTTAAAATGGATT
ATCTTCAGCCTGACAAATAAATTTAAGACATTACCTAGCATTGTATAGTTGTTGAGGTCC
CAGGAGAAAGTACCACAGTCATGATGACAATAAGGAGTCAGTGTTCTTTTTCTTAGAGCA
GAATATCACACTGCGTTACTTCTTCAAAAGCAGTGCTTATTTTTCACGCCAGCTGTTACA
TTTGAATCAGATATAAATAAGAGATTTTCCATGAACACTTTTGATCATAGTGTGTTATTT
AAGCTGGTATGTTTATTTTATTTTTCTTGGGAAAATAGCATTATATTTTGGCTTTCATTA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-260, gnl|bosTau2|chr4 (13888433-13888170)
               

               
               1-260, gnl|Hg17|chr7 (82640065-82639771)
               

               
               1-260, gnl|Mm7|chr5 (13735031-13735338)
               


               
               270-1020, gnl|bosTau2|chr4 (13887209-13886432)
               

               
               270-1020, gnl|Hg17|chr7 (82638582-82637514)
               

               
               270-1020, gnl|Mm7|chr5 (13736612-13737250)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-260, gnl|bosTau2|chr4 (13888433-13888170)
               

               
               1-260, gnl|Hg17|chr7 (82640065-82639771)
               

               
               1-260, gnl|Mm7|chr5 (13735031-13735338)
               


               
               270-1020, gnl|bosTau2|chr4 (13887209-13886432)
               

               
               270-1020, gnl|Hg17|chr7 (82638582-82637514)
               

               
               270-1020, gnl|Mm7|chr5 (13736612-13737250)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               liv (0.292569)
               

               
               fco (0.157208)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               fco (0.157208)
               

               
               eru (0.120048)

	1-260, gnl\|bosTau2\|chr4 (13888433-13888170)
	1-260, gnl\|Hg17\|chr7 (82640065-82639771)
	1-260, gnl\|Mm7\|chr5 (13735031-13735338)

	270-1020, gnl\|bosTau2\|chr4 (13887209-13886432)
	270-1020, gnl\|Hg17\|chr7 (82638582-82637514)
	270-1020, gnl\|Mm7\|chr5 (13736612-13737250)