Non-Coding RNA Search

Ss1.1-rpfco0124_i5.5

Sequence:


               
               TCTCGCAGACTTTTTCTAGCTGGATTTCTAAACGGCAGCTAGCAAGCAAATAGAGTTCCT
CAATGCACGCCATCACATACCAATGACGATATATTCATCTTGAAATGTGATACATCCTTT
TTCCCTCCACCCCCTTTCACCTTTTGTCGATTTGTCTCTGGAGGTGGATTGCTAATACCT
GAGATTTTGCACTTGTCTAGGGCGGAAACTTTCTGGGGTGTTTGACGATTGATTATTTGG
TACCTGCTTTCTAAAAATGGCTAAACACCTTTCCTTGGAACAAAAGTGAGAAATGCAAAT
CCTAATAACTCAAGGCAAAAATTTCAAAGTGTAAGCACAGTTATTATCCACTCCCACAAA
GAAAAGCTTACTCTTCCACAAATATTTGATAGCATAGAGCCCAGTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCGCAGACTTTTTCTAGCTGGATTTCTAAACGGCAGCTAGCAAGCAAATAGAGTTCCT
CAATGCACGCCATCACATACCAATGACGATATATTCATCTTGAAATGTGATACATCCTTT
TTCCCTCCACCCCCTTTCACCTTTTGTCGATTTGTCTCTGGAGGTGGATTGCTAATACCT
GAGATTTTGCACTTGTCTAGGGCGGAAACTTTCTGGGGTGTTTGACGATTGATTATTTGG
TACCTGCTTTCTAAAAATGGCTAAACACCTTTCCTTGGAACAAAAGTGAGAAATGCAAAT
CCTAATAACTCAAGGCAAAAATTTCAAAGTGTAAGCACAGTTATTATCCACTCCCACAAA
GAAAAGCTTACTCTTCCACAAATATTTGATAGCATAGAGCCCAGTAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               190-290, + strand, RNAz p=0.78135

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               190-290, + strand, RNAz p=0.78135

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-408, gnl|bosTau2|chr5 (52758682-52759085)
               

               
               1-408, gnl|canFam2|chr27 (25872927-25872437)
               

               
               1-408, gnl|dasNov1|scaffold_565 (71173-70769)
               

               
               1-408, gnl|hg17|chr12 (24608282-24608720)
               

               
               1-408, gnl|Hg17|chr12 (24608478-24608877)
               

               
               1-408, gnl|loxAfr1|scaffold_7715 (45003-44566)
               

               
               1-408, gnl|mm7|chr6 (144874290-144874696)
               

               
               1-408, gnl|Mm7|chr6 (144874467-144874863)
               

               
               1-408, gnl|monDom2|scaffold_31 (1129806-1129345)
               

               
               1-408, gnl|oryCun1|scaffold_186922 (3706-4104)
               

               
               1-408, gnl|panTro1|chrUn_random (51006844-51007282)
               

               
               1-408, gnl|rheMac2|chr11 (24827321-24827759)
               

               
               1-408, gnl|rn3|chr4 (182656810-182657240)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-408, gnl|bosTau2|chr5 (52758682-52759085)
               

               
               1-408, gnl|canFam2|chr27 (25872927-25872437)
               

               
               1-408, gnl|dasNov1|scaffold_565 (71173-70769)
               

               
               1-408, gnl|hg17|chr12 (24608282-24608720)
               

               
               1-408, gnl|Hg17|chr12 (24608478-24608877)
               

               
               1-408, gnl|loxAfr1|scaffold_7715 (45003-44566)
               

               
               1-408, gnl|mm7|chr6 (144874290-144874696)
               

               
               1-408, gnl|Mm7|chr6 (144874467-144874863)
               

               
               1-408, gnl|monDom2|scaffold_31 (1129806-1129345)
               

               
               1-408, gnl|oryCun1|scaffold_186922 (3706-4104)
               

               
               1-408, gnl|panTro1|chrUn_random (51006844-51007282)
               

               
               1-408, gnl|rheMac2|chr11 (24827321-24827759)
               

               
               1-408, gnl|rn3|chr4 (182656810-182657240)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fco (0.157208)
               

               
               sug (0.127291)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               sug (0.127291)

	1-408, gnl\|bosTau2\|chr5 (52758682-52759085)
	1-408, gnl\|canFam2\|chr27 (25872927-25872437)
	1-408, gnl\|dasNov1\|scaffold_565 (71173-70769)
	1-408, gnl\|hg17\|chr12 (24608282-24608720)
	1-408, gnl\|Hg17\|chr12 (24608478-24608877)
	1-408, gnl\|loxAfr1\|scaffold_7715 (45003-44566)
	1-408, gnl\|mm7\|chr6 (144874290-144874696)
	1-408, gnl\|Mm7\|chr6 (144874467-144874863)
	1-408, gnl\|monDom2\|scaffold_31 (1129806-1129345)
	1-408, gnl\|oryCun1\|scaffold_186922 (3706-4104)
	1-408, gnl\|panTro1\|chrUn_random (51006844-51007282)
	1-408, gnl\|rheMac2\|chr11 (24827321-24827759)
	1-408, gnl\|rn3\|chr4 (182656810-182657240)