Non-Coding RNA Search

Ss1.1-rpfco0127_k18.5

Sequence:


               
               TTGTTTTCTCCATCCAAAAAATATTTGTTTCTTCCACATAAAGAAGAAAGTGTATGTGTG
TGTGTGTATATATATATATATATGTGTGTATATATATATATATATATATATATAAAATAG
CTTTATAGCTTTTTTCTTTCACGAAGGCAGGTTCATAATTCTGTAAAAAGAAAAATAGTT
TCTGAGTCAGACATATGACACCAGAGCTTGCTGTTTTTATAGGATTGTATCATGTACATC
AGGTCTGTAAATGTGCTCAGCAGTGTAACATGTGAATCCTTTTTAAAGTGCTCAGATTTT
GGATGTGTAAGCCATTGATATAACATTGTAATTAATTCAAAATGTTTAAATTAAATAATT
TAATGTTTTAAATTTATTTATGTAGATCACATCATTGTTATTATATGCAGTAGAACTATG
TGAAATGTCTTTTGGTTTGGTTCAACAATTATTTATTTTTTAGAATGTAAATTTAAAGAC
TTTAAGGACATTCAAAATCTAAAATAGTGTTCACAATTTGGCAATTTTAATGTAAAGTTG
GTTCTTTTCTAACTTTTCAAAAAGTGATGTGAGTGTCAATAGGAAAACAGTTGGAAATGG
AATCATCTAAAGATCATTTTTAAGATTTGTTTTAATTAGCGTGTATTGACTTTTAAAGTT
GACTTGTAGTAATCGTTAATGGTTTTTTTAAAATCAGATTTTTGTGTGTTGATTGATTTT
TGTGTTATGGCTTTTCTTTTGTTACTTTCATATTAAAGGTTTTGTGTTTTTTTGTTGTTG
TCATTTGTTTCGTGAGGGGGTGGTTATCTTCCAGTGTTTACTATGTTTAAATAAAGAGAA
ATTGAATTTTATTGTTCATTTATATAGTATTTGATAGCTTGGTATAATAAGAACAGTACA
GTTCTAATTTTTATGACTTTTGTAATTACAATGATATTTTCTTTTGTAATAAAATCCAAA
GTAAATTAAACATTTAAAATGTAGAACTGATATTTTTCATTTATATGAACTACAAGTATC
TACCAAGTCTATAATGTGAATAATCCTTCTTTTCAAATCTCTTTCATAATACTAGACGAT
AACTATTTTTTGGAGATGTTATTGAAGTTGAAAGAGCAATAAAAATCTACTGAATCAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTTTTCTCCATCCAAAAAATATTTGTTTCTTCCACATAAAGAAGAAAGTGTATGTGTG
TGTGTGTATATATATATATATATGTGTGTATATATATATATATATATATATATAAAATAG
CTTTATAGCTTTTTTCTTTCACGAAGGCAGGTTCATAATTCTGTAAAAAGAAAAATAGTT
TCTGAGTCAGACATATGACACCAGAGCTTGCTGTTTTTATAGGATTGTATCATGTACATC
AGGTCTGTAAATGTGCTCAGCAGTGTAACATGTGAATCCTTTTTAAAGTGCTCAGATTTT
GGATGTGTAAGCCATTGATATAACATTGTAATTAATTCAAAATGTTTAAATTAAATAATT
TAATGTTTTAAATTTATTTATGTAGATCACATCATTGTTATTATATGCAGTAGAACTATG
TGAAATGTCTTTTGGTTTGGTTCAACAATTATTTATTTTTTAGAATGTAAATTTAAAGAC
TTTAAGGACATTCAAAATCTAAAATAGTGTTCACAATTTGGCAATTTTAATGTAAAGTTG
GTTCTTTTCTAACTTTTCAAAAAGTGATGTGAGTGTCAATAGGAAAACAGTTGGAAATGG
AATCATCTAAAGATCATTTTTAAGATTTGTTTTAATTAGCGTGTATTGACTTTTAAAGTT
GACTTGTAGTAATCGTTAATGGTTTTTTTAAAATCAGATTTTTGTGTGTTGATTGATTTT
TGTGTTATGGCTTTTCTTTTGTTACTTTCATATTAAAGGTTTTGTGTTTTTTTGTTGTTG
TCATTTGTTTCGTGAGGGGGTGGTTATCTTCCAGTGTTTACTATGTTTAAATAAAGAGAA
ATTGAATTTTATTGTTCATTTATATAGTATTTGATAGCTTGGTATAATAAGAACAGTACA
GTTCTAATTTTTATGACTTTTGTAATTACAATGATATTTTCTTTTGTAATAAAATCCAAA
GTAAATTAAACATTTAAAATGTAGAACTGATATTTTTCATTTATATGAACTACAAGTATC
TACCAAGTCTATAATGTGAATAATCCTTCTTTTCAAATCTCTTTCATAATACTAGACGAT
AACTATTTTTTGGAGATGTTATTGAAGTTGAAAGAGCAATAAAAATCTACTGAATCAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9D1W2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9D1W2_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               103-1137, gnl|bosTau2|chr22 (5897067-5898084)
               

               
               103-1137, gnl|Hg17|chr3 (27390241-27389218)
               

               
               103-1137, gnl|Mm7|chr14 (12611897-12612800)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-1137, gnl|bosTau2|chr22 (5897067-5898084)
               

               
               103-1137, gnl|Hg17|chr3 (27390241-27389218)
               

               
               103-1137, gnl|Mm7|chr14 (12611897-12612800)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fco (0.471624)
               

               
               ret (0.3862)
               

               
               fbs (0.350693)
               

               
               bfe (0.299715)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               ret (0.3862)
               

               
               fbs (0.350693)
               

               
               bfe (0.299715)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	103-1137, gnl\|bosTau2\|chr22 (5897067-5898084)
	103-1137, gnl\|Hg17\|chr3 (27390241-27389218)
	103-1137, gnl\|Mm7\|chr14 (12611897-12612800)

	fco (0.471624)
	ret (0.3862)
	fbs (0.350693)
	bfe (0.299715)
	ece (0.229305)
	fcc (0.197785)
	nca (0.136874)
	kid (0.129735)
	ese (0.126502)
	tra (0.123092)
	ldo (0.0970026)