Non-Coding RNA Search

Ss1.1-rpfco0127_p3.5

Sequence:


               
               AGCATATGGTTCACATGCAAATAACACTTTCCCCAAATTTTTTCTGAGTTACACTACTAT
CTTATTGCTATTCTTCCTGCACCCAACCAGCAGAATTCTTTTAGGGTGGAGGAACTAATC
AGCTTGTTCTGCAGTTATGAAGCCAACTTGTGAATCTTTGAAGAAAGGGAGTTTGTTACT
ATTCTCTTTGAGACAGAAGTGACTCCGCTTTGCCACTTAGACATACTATTTAAAGGGTTT
TTCTTCTTAAATTTTTTGAAACACCTGAGAAAGTTAAAGGCATGTTGGGTTTGTTTTATT
TCCTCTGTTTTTAATCCATATGCGAATAAAACTGCTTCTCTCTTACACTGCTTAAACTAG
AAAGTAAGATGTTTAATGTAGGTTACTGCTAATTCATAAGCACAAAAGAATCATGTATAA
GAAACCAGATTTAAGTGTTTTAAATAAAATGTAAAAGTTTTTATTTGGTAGAGATGGAAA
AATTGTGTTGGCTTGGTCTGCATGTTTAATGATGTGCTTGTATACTGATAGCTATGTCAT
TTTTAAATAAGAAGTACACAAGCAAGCCAGATTTTTAAATGACAAAGTCCATAAATAACT
GGAAAATTTTTGTTGTCTGTTGTTGAAATTTATAACCATTTATCACTAAATTGCACATTG
CCTTTTTTAATTTATGCTCTGGTTTTGGTTTACAGTGTAATTAATACCTCATTTTTTAAA
AGAACCACTACTGTTATATTTCATTAATTTAAACAGCTAGAAAATTCATGTAGTTGCTTT
TTTTTATATAACCTGTTAATGAATTCTTGATTTTTGTATCTGCCACAGTAAAGCATTGCA
CAGTATTTATCAGTATTTACAAAATGTCCTGTCCTTTTTTAATCTTTGCTTAATCATATT
TTTGTCTGTATAATCAGAAGTTTTTAACCGTCCTTCTTTTTTGTACAAATATGTATTGTA
TTAAGGTGTTAATTTCTTGGATAAATTTTTTCCAAATATTAAAGTTATATAATCAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCATATGGTTCACATGCAAATAACACTTTCCCCAAATTTTTTCTGAGTTACACTACTAT
CTTATTGCTATTCTTCCTGCACCCAACCAGCAGAATTCTTTTAGGGTGGAGGAACTAATC
AGCTTGTTCTGCAGTTATGAAGCCAACTTGTGAATCTTTGAAGAAAGGGAGTTTGTTACT
ATTCTCTTTGAGACAGAAGTGACTCCGCTTTGCCACTTAGACATACTATTTAAAGGGTTT
TTCTTCTTAAATTTTTTGAAACACCTGAGAAAGTTAAAGGCATGTTGGGTTTGTTTTATT
TCCTCTGTTTTTAATCCATATGCGAATAAAACTGCTTCTCTCTTACACTGCTTAAACTAG
AAAGTAAGATGTTTAATGTAGGTTACTGCTAATTCATAAGCACAAAAGAATCATGTATAA
GAAACCAGATTTAAGTGTTTTAAATAAAATGTAAAAGTTTTTATTTGGTAGAGATGGAAA
AATTGTGTTGGCTTGGTCTGCATGTTTAATGATGTGCTTGTATACTGATAGCTATGTCAT
TTTTAAATAAGAAGTACACAAGCAAGCCAGATTTTTAAATGACAAAGTCCATAAATAACT
GGAAAATTTTTGTTGTCTGTTGTTGAAATTTATAACCATTTATCACTAAATTGCACATTG
CCTTTTTTAATTTATGCTCTGGTTTTGGTTTACAGTGTAATTAATACCTCATTTTTTAAA
AGAACCACTACTGTTATATTTCATTAATTTAAACAGCTAGAAAATTCATGTAGTTGCTTT
TTTTTATATAACCTGTTAATGAATTCTTGATTTTTGTATCTGCCACAGTAAAGCATTGCA
CAGTATTTATCAGTATTTACAAAATGTCCTGTCCTTTTTTAATCTTTGCTTAATCATATT
TTTGTCTGTATAATCAGAAGTTTTTAACCGTCCTTCTTTTTTGTACAAATATGTATTGTA
TTAAGGTGTTAATTTCTTGGATAAATTTTTTCCAAATATTAAAGTTATATAATCAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1016, gnl|bosTau2|chr26 (5855262-5854240)
               

               
               1-1016, gnl|Hg17|chr10 (93263459-93264496)
               

               
               1-1016, gnl|Mm7|chr19 (36320857-36321815)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1016, gnl|bosTau2|chr26 (5855262-5854240)
               

               
               1-1016, gnl|Hg17|chr10 (93263459-93264496)
               

               
               1-1016, gnl|Mm7|chr19 (36320857-36321815)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fco (0.314416)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)

	1-1016, gnl\|bosTau2\|chr26 (5855262-5854240)
	1-1016, gnl\|Hg17\|chr10 (93263459-93264496)
	1-1016, gnl\|Mm7\|chr19 (36320857-36321815)