Non-Coding RNA Search

Ss1.1-rpfco0127_p7.5

Sequence:


               
               GTTTGTCATAACATATTGTGCATAATCACAGTATTTATTTTCTAGGACTCTTGTGAATGT
GTAGACTTATGTTTACTACTAAGGGAACAATTATTTATAAAATAATATTAAATCCAGTAT
TAGCTGCCTATCTCAGACACTTAATACTTGCAGAGAGATCCATGTTACATAACCACACTG
AAGTTTTTGTTTTGTTTTGTTTTTGCAAAGAATCACCCTCATTGTTGAAAGTAAATGTAC
TCTTAGGGTGCAGATATTAGTGTTCCAATAAGCATGTGATTATATTAAGGTGGTGGTAGC
GGGAAGATAATCTTGATTCCATTGGGAATCTTAGGTTTTCGTAAATTTATTGGGAAAATA
GTTTTTCCTGTACTGCTGAAGTTTCTTTTTGGTAAACAGTATCTTTCTAAAAGAAAAAGC
ATGAAGGAGAAATTGAGGTGTGTACATTTCCTCAAATGACCAGCATTGTATTCGTGAATA
CTATGTATCTTGCAATGAACAGTGTGGAAGCTGTTCATTTTTCAATCTGAAGTAAAATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGTCATAACATATTGTGCATAATCACAGTATTTATTTTCTAGGACTCTTGTGAATGT
GTAGACTTATGTTTACTACTAAGGGAACAATTATTTATAAAATAATATTAAATCCAGTAT
TAGCTGCCTATCTCAGACACTTAATACTTGCAGAGAGATCCATGTTACATAACCACACTG
AAGTTTTTGTTTTGTTTTGTTTTTGCAAAGAATCACCCTCATTGTTGAAAGTAAATGTAC
TCTTAGGGTGCAGATATTAGTGTTCCAATAAGCATGTGATTATATTAAGGTGGTGGTAGC
GGGAAGATAATCTTGATTCCATTGGGAATCTTAGGTTTTCGTAAATTTATTGGGAAAATA
GTTTTTCCTGTACTGCTGAAGTTTCTTTTTGGTAAACAGTATCTTTCTAAAAGAAAAAGC
ATGAAGGAGAAATTGAGGTGTGTACATTTCCTCAAATGACCAGCATTGTATTCGTGAATA
CTATGTATCTTGCAATGAACAGTGTGGAAGCTGTTCATTTTTCAATCTGAAGTAAAATAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               282-540, - strand, RNAz p=0.951699

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               282-540, - strand, RNAz p=0.951699

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               295-401, + strand, RNAmicro p=0.998663

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               295-401, + strand, RNAmicro p=0.998663

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               202-540, gnl|bosTau2|chr11 (44648008-44647670)
               

               
               202-540, gnl|Hg17|chr16 (48822850-48823228)
               

               
               202-540, gnl|Mm7|chr8 (86851660-86852011)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               202-540, gnl|bosTau2|chr11 (44648008-44647670)
               

               
               202-540, gnl|Hg17|chr16 (48822850-48823228)
               

               
               202-540, gnl|Mm7|chr8 (86851660-86852011)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ece (0.229305)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               kid (0.129735)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               kid (0.129735)

	202-540, gnl\|bosTau2\|chr11 (44648008-44647670)
	202-540, gnl\|Hg17\|chr16 (48822850-48823228)
	202-540, gnl\|Mm7\|chr8 (86851660-86852011)

	ece (0.229305)
	hea (0.204499)
	sag (0.182715)
	sin (0.174948)
	fco (0.157208)
	kid (0.129735)