Ss1.1-rpfco0128_j2.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACTATCCTGTGTTCTTCCTTAATCAGTAGCATGCTTGTGCTTTCCACTTCTAGCTGATC ATTATTTTCCTGATGTATATTTACCAAATTGATCAAATGTTACCCAGAACTGTAGAACCA TGTGGTTCTCATTTTTTATGCTGCAGAGACCTGATGATGTTTGGTAACTGCAGAGAAATG TAAGTTACACTCAGGATCACTGTTATTGCTATGGCCACTGATGATTTTTTACACAAATAT AATTGAAGTTTTCCATCAAAAAGTATGATACTGTATTAATACACACTAGATGATAAGAAC AGTTGTTCCACGAATGATTCTATGAAGCTATGCATCTTAGACCTCTTGAGCTGTGAATTA GCACTGTTTTCTATAGTTATTCTCACAATCATTTTATAATTTTATAATTTCCATTAATTT CCAGTGTGTTTGTCTTCGGTGATCTCCCAGAACTGTAAACTTTCTTCTTTGACTTAAATA CTGAAGCATATAATTAAAGCAATTGCTAAGTAGCAGCTTAAAACTCCAAGTATCAGATTG TATTTAACATCTTTAGGAGCGTGATCGTAAAGAGCTCTATTTTTGACACCCTCCCCCCTT TTTTAACATTTAGATTTTATAAGGGTTTTATATCACATCTGTCCATATTTTCAAAGGAAT GAGGTTTTTAGGTAGGTTTAGACACAGTGAGTCGTTCAAGTGATAATAGATGGCTTCCAG AGTGTGGTTTGAAGACTGTCTGTGAATCCAGGTGGGGGTCTCCGCAGTGCCATGGAGAGA CGGAGTCCTCTCTGTAGGTCGCCATCACGTAGTCATTTTGATCCTGAATTTCACATTAAA TTATTTGAGTGTATACAGACCTAAATTTTAAAATCTGTACATATATTATTTTGATGTATT AAGATTAATAAATATTGCTTATTTAAATTTTATTTATGCACATACTTATAAAGGACAGGA ATGTCCAGGAAAGTAATTAATTGTTAAATAATATGTAACTTTTTAACTTTTTAAAGAAAT AACAAGATTTTTAATGTGTGTCTCCCTCAGGGTTGTTTAAAGTTGTTTTTTTTTCCTCCC TAAAATATAAATAGTGGTAACTATATGTTTTGTATCTTCTAGCACCAACTGCTGTAAAGC AATGCTGCAAATAATGCTTGAATAAAAATGGCTAAGCCAACAACAAAATAAATACTTTTT ATATTAGTTTTATAATCCTTACATTCGACAGCTTTCCAAATTGTACTTATATTTAAACAA AACTGTTGCAGTTTTTACTATTTATTTTGTCTCCCATGTTTATGAAAATACTGCACAGTT CCAAAGGCATGGTCACCTATATTGGCATTTATGTAATGTACTCTGTTCCCCCAAAGGCTA TGGAGCCAGTATCCAGAGAAGAGCAAAATTCAAGCTGTAGAAAACATTCTAAGATTTCAT GCATGCAGTTTTGACATATCTGAAAATAGATTTTTGTATATTTATGGTGGGAGGTGGTTG GGAACTTTTAACAGAATATTAATTTTTTGTACAGTCTGTGGGCATTTACACATTTTTAAT GTATTAAGATTTGGTAATTATGTGCACATTAAATTAATAAAATAGTGACTTCCTGTTATG ATTTGTGAATTCCCTAAGACTTTGGATTTTTTTAAAGTAACTTTATATCAGAAATGATAC TGCATCTTTATATTTTTAAAACTGTATTGCTGCTCAAGAATGGTACCCTGATGTCAAAAA GGCATAAACTCAGAATTGTATATTCAGCACTGTAAATACCTTATGAAATTTTTTTGAGGG AAGCTGTTCAAAATAAAGACTTAAATCAATGGTATAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACTATCCTGTGTTCTTCCTTAATCAGTAGCATGCTTGTGCTTTCCACTTCTAGCTGATC ATTATTTTCCTGATGTATATTTACCAAATTGATCAAATGTTACCCAGAACTGTAGAACCA TGTGGTTCTCATTTTTTATGCTGCAGAGACCTGATGATGTTTGGTAACTGCAGAGAAATG TAAGTTACACTCAGGATCACTGTTATTGCTATGGCCACTGATGATTTTTTACACAAATAT AATTGAAGTTTTCCATCAAAAAGTATGATACTGTATTAATACACACTAGATGATAAGAAC AGTTGTTCCACGAATGATTCTATGAAGCTATGCATCTTAGACCTCTTGAGCTGTGAATTA GCACTGTTTTCTATAGTTATTCTCACAATCATTTTATAATTTTATAATTTCCATTAATTT CCAGTGTGTTTGTCTTCGGTGATCTCCCAGAACTGTAAACTTTCTTCTTTGACTTAAATA CTGAAGCATATAATTAAAGCAATTGCTAAGTAGCAGCTTAAAACTCCAAGTATCAGATTG TATTTAACATCTTTAGGAGCGTGATCGTAAAGAGCTCTATTTTTGACACCCTCCCCCCTT TTTTAACATTTAGATTTTATAAGGGTTTTATATCACATCTGTCCATATTTTCAAAGGAAT GAGGTTTTTAGGTAGGTTTAGACACAGTGAGTCGTTCAAGTGATAATAGATGGCTTCCAG AGTGTGGTTTGAAGACTGTCTGTGAATCCAGGTGGGGGTCTCCGCAGTGCCATGGAGAGA CGGAGTCCTCTCTGTAGGTCGCCATCACGTAGTCATTTTGATCCTGAATTTCACATTAAA TTATTTGAGTGTATACAGACCTAAATTTTAAAATCTGTACATATATTATTTTGATGTATT AAGATTAATAAATATTGCTTATTTAAATTTTATTTATGCACATACTTATAAAGGACAGGA ATGTCCAGGAAAGTAATTAATTGTTAAATAATATGTAACTTTTTAACTTTTTAAAGAAAT AACAAGATTTTTAATGTGTGTCTCCCTCAGGGTTGTTTAAAGTTGTTTTTTTTTCCTCCC TAAAATATAAATAGTGGTAACTATATGTTTTGTATCTTCTAGCACCAACTGCTGTAAAGC AATGCTGCAAATAATGCTTGAATAAAAATGGCTAAGCCAACAACAAAATAAATACTTTTT ATATTAGTTTTATAATCCTTACATTCGACAGCTTTCCAAATTGTACTTATATTTAAACAA AACTGTTGCAGTTTTTACTATTTATTTTGTCTCCCATGTTTATGAAAATACTGCACAGTT CCAAAGGCATGGTCACCTATATTGGCATTTATGTAATGTACTCTGTTCCCCCAAAGGCTA TGGAGCCAGTATCCAGAGAAGAGCAAAATTCAAGCTGTAGAAAACATTCTAAGATTTCAT GCATGCAGTTTTGACATATCTGAAAATAGATTTTTGTATATTTATGGTGGGAGGTGGTTG GGAACTTTTAACAGAATATTAATTTTTTGTACAGTCTGTGGGCATTTACACATTTTTAAT GTATTAAGATTTGGTAATTATGTGCACATTAAATTAATAAAATAGTGACTTCCTGTTATG ATTTGTGAATTCCCTAAGACTTTGGATTTTTTTAAAGTAACTTTATATCAGAAATGATAC TGCATCTTTATATTTTTAAAACTGTATTGCTGCTCAAGAATGGTACCCTGATGTCAAAAA GGCATAAACTCAGAATTGTATATTCAGCACTGTAAATACCTTATGAAATTTTTTTGAGGG AAGCTGTTCAAAATAAAGACTTAAATCAATGGTATAAAAAAAAAAAAA |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 4-423, gnl|bosTau2|chr1 (45375213-45375630) | |
| 4-423, gnl|canFam2|chr33 (34339254-34338861) | |
| 4-423, gnl|echTel1|scaffold_219061 (4770-4395) | |
| 4-423, gnl|hg17|chr3 (195606004-195606394) | |
| 4-423, gnl|Hg17|chr3 (195606538-195606092) | |
| 4-423, gnl|mm7|chr16 (29986643-29987016) | |
| 4-423, gnl|Mm7|chr16 (29987165-29986750) | |
| 4-423, gnl|oryCun1|scaffold_168333 (15090-14708) | |
| 4-423, gnl|panTro1|chr2 (199732598-199732988) | |
| 4-423, gnl|rheMac2|chr2 (186624996-186625382) | |
| 4-423, gnl|rn3|chr11 (72396472-72396104) | |
| 467-687, gnl|bosTau2|chr1 (45375648-45375864) | |
| 467-687, gnl|canFam2|chr33 (34339489-34339255) | |
| 467-687, gnl|dasNov1|scaffold_44878 (8547-8752) | |
| 467-687, gnl|hg17|chr3 (195605782-195606003) | |
| 467-687, gnl|Hg17|chr3 (195606073-195605853) | |
| 467-687, gnl|mm7|chr16 (29986432-29986642) | |
| 467-687, gnl|Mm7|chr16 (29986702-29986503) | |
| 467-687, gnl|oryCun1|scaffold_168333 (15313-15091) | |
| 467-687, gnl|panTro1|chr2 (199732376-199732597) | |
| 467-687, gnl|rn3|chr11 (72396684-72396473) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-423, gnl|bosTau2|chr1 (45375213-45375630) | |
| 4-423, gnl|canFam2|chr33 (34339254-34338861) | |
| 4-423, gnl|echTel1|scaffold_219061 (4770-4395) | |
| 4-423, gnl|hg17|chr3 (195606004-195606394) | |
| 4-423, gnl|Hg17|chr3 (195606538-195606092) | |
| 4-423, gnl|mm7|chr16 (29986643-29987016) | |
| 4-423, gnl|Mm7|chr16 (29987165-29986750) | |
| 4-423, gnl|oryCun1|scaffold_168333 (15090-14708) | |
| 4-423, gnl|panTro1|chr2 (199732598-199732988) | |
| 4-423, gnl|rheMac2|chr2 (186624996-186625382) | |
| 4-423, gnl|rn3|chr11 (72396472-72396104) | |
| 467-687, gnl|bosTau2|chr1 (45375648-45375864) | |
| 467-687, gnl|canFam2|chr33 (34339489-34339255) | |
| 467-687, gnl|dasNov1|scaffold_44878 (8547-8752) | |
| 467-687, gnl|hg17|chr3 (195605782-195606003) | |
| 467-687, gnl|Hg17|chr3 (195606073-195605853) | |
| 467-687, gnl|mm7|chr16 (29986432-29986642) | |
| 467-687, gnl|Mm7|chr16 (29986702-29986503) | |
| 467-687, gnl|oryCun1|scaffold_168333 (15313-15091) | |
| 467-687, gnl|panTro1|chr2 (199732376-199732597) | |
| 467-687, gnl|rn3|chr11 (72396684-72396473) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| rec (0.865351) | |
| kid (0.518941) | |
| pro (0.512033) | |
| lin (0.436808) | |
| ret (0.3862) | |
| bfe (0.299715) | |
| csk (0.281492) | |
| sug (0.254582) | |
| hea (0.204499) | |
| aor (0.195274) | |
| mgm (0.180343) | |
| nco (0.161734) | |
| fco (0.157208) | |
| liv (0.146284) | |
| spl (0.143184) | |
| clu (0.119646) | |
| cbl (0.114797) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.865351) | |
| kid (0.518941) | |
| pro (0.512033) | |
| lin (0.436808) | |
| ret (0.3862) | |
| bfe (0.299715) | |
| csk (0.281492) | |
| sug (0.254582) | |
| hea (0.204499) | |
| aor (0.195274) | |
| mgm (0.180343) | |
| nco (0.161734) | |
| fco (0.157208) | |
| liv (0.146284) | |
| spl (0.143184) | |
| clu (0.119646) | |
| cbl (0.114797) |