Non-Coding RNA Search

Ss1.1-rpfco0128_p4.5

Sequence:


               
               CTACCCAACTCTGGCTAATATCGAAAGGAAGAAAAAGTTAAAACTTGAAAAGGAAAAGAG
TGGAGCAGTGTTGACAACAACGCAATATGGCAAGATGAAGGGTATGGCCAGACATTCACA
GATGGCAAAGATCAGAAGTCCTGGCAAACATCACAGATGGAAAAATGGCCATCCTGACCA
GAGAGCAGCCACTGGGTCAGGCAATCACTTGTGTGATTCAAAGCCCGAAGGTCCACCTGA
GGCAAATTCAGACCCTCTCGGTGTTTTGGTAAACAGTGATTCTGAGTCTGATAAAGAGGA
GAAACCACAAAGTACTGTCATACCCAAGGAAGTGACACCAGCCCTGTGCTCCCTCATGAG
CAGCTATGGCAGCCTCTCGGGGTCAGAGAGTGAGCCAGAAGAAGCTCCCATCAAGACTGA
AGCAGACGTTCTGGCAGAAGACCAGGTTCTTCATAGCAATACTCCCGAGAAACCAAGTCA
AGATGTTAAAGCAACTGTTAGAAATTTCTCAGAAGCCAAATATGAGCGCCAAAAGAAAAA
TTTTAAAAAGACAGATCCTAAGAAGAAAAAAAATCATCACAACTATCAAACATTATTTGA
ACCAAGAACACACCATCCATATCTCCTGGAGATGCTTTTAGCTCCGGACATTCGACATGA
AAGAAATGTAATTTTGCAGTGTGTTCGGTATATCATCAAAAAAGACTTTTTTGGACTTAA
TACTACTTCTGCGAAAACTAAAGATGAATAGGTGTCTGACGTTTTAGCACAGATAACTGA
AGCATGTAAAATAGTAACCTCCTCAACTCTGTGGAGGAGAACTTTTTTTTTTAAACTGGA
TTAGTAATGAAATTGTAAGCCTCATGGTAATTATGTCAGATTTTCAAGTCTTTGCCTTGA
CTCTATACAAATAAATATATAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACCCAACTCTGGCTAATATCGAAAGGAAGAAAAAGTTAAAACTTGAAAAGGAAAAGAG
TGGAGCAGTGTTGACAACAACGCAATATGGCAAGATGAAGGGTATGGCCAGACATTCACA
GATGGCAAAGATCAGAAGTCCTGGCAAACATCACAGATGGAAAAATGGCCATCCTGACCA
GAGAGCAGCCACTGGGTCAGGCAATCACTTGTGTGATTCAAAGCCCGAAGGTCCACCTGA
GGCAAATTCAGACCCTCTCGGTGTTTTGGTAAACAGTGATTCTGAGTCTGATAAAGAGGA
GAAACCACAAAGTACTGTCATACCCAAGGAAGTGACACCAGCCCTGTGCTCCCTCATGAG
CAGCTATGGCAGCCTCTCGGGGTCAGAGAGTGAGCCAGAAGAAGCTCCCATCAAGACTGA
AGCAGACGTTCTGGCAGAAGACCAGGTTCTTCATAGCAATACTCCCGAGAAACCAAGTCA
AGATGTTAAAGCAACTGTTAGAAATTTCTCAGAAGCCAAATATGAGCGCCAAAAGAAAAA
TTTTAAAAAGACAGATCCTAAGAAGAAAAAAAATCATCACAACTATCAAACATTATTTGA
ACCAAGAACACACCATCCATATCTCCTGGAGATGCTTTTAGCTCCGGACATTCGACATGA
AAGAAATGTAATTTTGCAGTGTGTTCGGTATATCATCAAAAAAGACTTTTTTGGACTTAA
TACTACTTCTGCGAAAACTAAAGATGAATAGGTGTCTGACGTTTTAGCACAGATAACTGA
AGCATGTAAAATAGTAACCTCCTCAACTCTGTGGAGGAGAACTTTTTTTTTTAAACTGGA
TTAGTAATGAAATTGTAAGCCTCATGGTAATTATGTCAGATTTTCAAGTCTTTGCCTTGA
CTCTATACAAATAAATATATAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17389410|gb|AAH17745.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17389410|gb|AAH17745.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               604-917, gnl|bosTau2|chrX (29318969-29318658)
               

               
               604-917, gnl|Hg17|chrX (43182275-43181974)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               604-917, gnl|bosTau2|chrX (29318969-29318658)
               

               
               604-917, gnl|Hg17|chrX (43182275-43181974)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ski (0.29347)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ova (0.129132)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ova (0.129132)

	604-917, gnl\|bosTau2\|chrX (29318969-29318658)
	604-917, gnl\|Hg17\|chrX (43182275-43181974)

	ski (0.29347)
	sug (0.254582)
	tra (0.246184)
	fco (0.157208)
	liv (0.146284)
	hyp (0.142837)
	ova (0.129132)