Non-Coding RNA Search

Ss1.1-rpfco0129_i11.5

Sequence:


               
               ACACAGTCCAAATCTGAACAGATGTTCAAGGATCAGCTGTACTAAAATTTTATAGTACAT
TCTTAGTCCCTTTTGGCTAGTAAATTAAAGCTGAAAATATAAAGTGTTGGCATACTGTGA
TTTGCAGTTTTACGTAAAGTGAGACTGCATCATTCTGATCAAGTTGCAACATTTTAATTT
TATCTGATAGGTCTGTATTGAGTAATCAATAACGAAGTGCAAATACTCCTGTCGTAGAGA
TCATTTCATATAAAAGTCACCTTAATTACTAGACCCTGAAGGCCAGAGGTAATGAAAGAG
TACTTTAGAAAGATTAAATGTTAATGATAAATTAAGGAAACAGTCTTTTAAATATATTTT
CCTTGGTGTAATATAATGTAGATTTTTACCTCAGATTTGTTATTAAACTTGATAAGTTTA
TTTTTCCATCTGTTTAATAAAATGAATATTTTCATATCCTGGCATATTTAAATTTTAAAT
AATTATAATTCTAATTTCTACTTATGTTACTAATTCTGTTATAATTTGGGGCCAGAACTA
CCCTCAAGTTTTGGAAGAAATTTGAAACATTGCTTATTTTTATATTATATAATTTAGGAA
AGATTATTTTATAGACTATGAATAACCTAATGTAAAATATGTATGATTTATTCTAATGTA
TTTGTATAAAATCATTTGTATATTCTACTTATAGTATGTACTTTCTATCTCAGTAAAAAT
ATATGAAAAGTTCAGATCTATCCTTGTGCAAACAAGTATTTGATTTCTAAAGTTTTCTTT
TTCCTACAACATTTGCATTCATTCATTCTTTCATGCCTAAATCTCCAATATATCTCAGGT
ATTCAGTAAAGTAGATCTTCCTGTGGAACAATGTGGTTCAGTTGTAAGAGACCAAACATG
GAGCACAGTGAGTTGTATATTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACAGTCCAAATCTGAACAGATGTTCAAGGATCAGCTGTACTAAAATTTTATAGTACAT
TCTTAGTCCCTTTTGGCTAGTAAATTAAAGCTGAAAATATAAAGTGTTGGCATACTGTGA
TTTGCAGTTTTACGTAAAGTGAGACTGCATCATTCTGATCAAGTTGCAACATTTTAATTT
TATCTGATAGGTCTGTATTGAGTAATCAATAACGAAGTGCAAATACTCCTGTCGTAGAGA
TCATTTCATATAAAAGTCACCTTAATTACTAGACCCTGAAGGCCAGAGGTAATGAAAGAG
TACTTTAGAAAGATTAAATGTTAATGATAAATTAAGGAAACAGTCTTTTAAATATATTTT
CCTTGGTGTAATATAATGTAGATTTTTACCTCAGATTTGTTATTAAACTTGATAAGTTTA
TTTTTCCATCTGTTTAATAAAATGAATATTTTCATATCCTGGCATATTTAAATTTTAAAT
AATTATAATTCTAATTTCTACTTATGTTACTAATTCTGTTATAATTTGGGGCCAGAACTA
CCCTCAAGTTTTGGAAGAAATTTGAAACATTGCTTATTTTTATATTATATAATTTAGGAA
AGATTATTTTATAGACTATGAATAACCTAATGTAAAATATGTATGATTTATTCTAATGTA
TTTGTATAAAATCATTTGTATATTCTACTTATAGTATGTACTTTCTATCTCAGTAAAAAT
ATATGAAAAGTTCAGATCTATCCTTGTGCAAACAAGTATTTGATTTCTAAAGTTTTCTTT
TTCCTACAACATTTGCATTCATTCATTCTTTCATGCCTAAATCTCCAATATATCTCAGGT
ATTCAGTAAAGTAGATCTTCCTGTGGAACAATGTGGTTCAGTTGTAAGAGACCAAACATG
GAGCACAGTGAGTTGTATATTATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               4-122, + strand, RNAz p=0.990487

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-122, + strand, RNAz p=0.990487

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               90-184, + strand, RNAmicro p=0.917234

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               90-184, + strand, RNAmicro p=0.917234

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-923, gnl|bosTau2|chr2 (42166662-42167579)
               

               
               4-923, gnl|Hg17|chr2 (114181241-114180406)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-923, gnl|bosTau2|chr2 (42166662-42167579)
               

               
               4-923, gnl|Hg17|chr2 (114181241-114180406)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cte (0.29274)
               

               
               fco (0.157208)
               

               
               ret (0.128733)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               fco (0.157208)
               

               
               ret (0.128733)

	4-923, gnl\|bosTau2\|chr2 (42166662-42167579)
	4-923, gnl\|Hg17\|chr2 (114181241-114180406)