Non-Coding RNA Search

Ss1.1-rpfco0129_j2.5

Sequence:


               
               GTCGGCCGCCCTGGGGACTCTGCACCAAGGGACTGCCTTGTCCAGTGTCGAGAACTTTAC
TGCTAGGATCTCAAATTGTTAATAACGCTATGTTAGCGCGCTTGAGAAAGAGAAGGTAGG
AATCCCAGCTCCTTTTTTCATCTGGGTGTTTTGTGTTTTGTTCCCTCCTCCCGGCGCGGA
CCCTCCCTACCTCGCGCCCACATTTTCGCAGCTTTGGATTCTCAGATGAGACTCTGTAGG
GCAACTGCTCGGGCGCGCTCTTCGGCTCTGCGGGTCCCTGTATTTATGCAAACTCGCCTT
TTGCTGCAGCCCTGCAGCCTGGGGTGGGGAGGAAGAGGGTGATGGTGGGGACCGCCCTGT
CCAGGCACAAGGGGCTTCCTTGACTTTGGGAAATTTTTTAAAAAGTCTAAGCCTTTTTGA
GGTCTAGAGAGTTTCAGGTCCCCGAGTTTAAAAAGAAAAAATCAGTAATGTTCAAAAGAA
GAATAATACAAAAATAGTAAGGGTCCCGAAGAATGCCAGAGAGGCAATAGTTTTTTATTT
GAGGACACTTGACTGGTGTACTTTTTCATGAAAAGGAAAAAATGATTAACGAACATGTTT
ACACAAGGAAAAAAGTCAAAATGATCATTTCTTACTTTAACCTGTGTTTTGTATCATAAT
AGACATGCGGAATTTTTATTTTGTACTTACTGCGTATTCTTTACAAGGAGTATTGTAAAT
TTTACTGGCAATTATTATTGTACCATTCTAATGTAAGATTTTTACACTTTTTTTCAGAAA
TAAATGCTTAATTTTCAAAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGGCCGCCCTGGGGACTCTGCACCAAGGGACTGCCTTGTCCAGTGTCGAGAACTTTAC
TGCTAGGATCTCAAATTGTTAATAACGCTATGTTAGCGCGCTTGAGAAAGAGAAGGTAGG
AATCCCAGCTCCTTTTTTCATCTGGGTGTTTTGTGTTTTGTTCCCTCCTCCCGGCGCGGA
CCCTCCCTACCTCGCGCCCACATTTTCGCAGCTTTGGATTCTCAGATGAGACTCTGTAGG
GCAACTGCTCGGGCGCGCTCTTCGGCTCTGCGGGTCCCTGTATTTATGCAAACTCGCCTT
TTGCTGCAGCCCTGCAGCCTGGGGTGGGGAGGAAGAGGGTGATGGTGGGGACCGCCCTGT
CCAGGCACAAGGGGCTTCCTTGACTTTGGGAAATTTTTTAAAAAGTCTAAGCCTTTTTGA
GGTCTAGAGAGTTTCAGGTCCCCGAGTTTAAAAAGAAAAAATCAGTAATGTTCAAAAGAA
GAATAATACAAAAATAGTAAGGGTCCCGAAGAATGCCAGAGAGGCAATAGTTTTTTATTT
GAGGACACTTGACTGGTGTACTTTTTCATGAAAAGGAAAAAATGATTAACGAACATGTTT
ACACAAGGAAAAAAGTCAAAATGATCATTTCTTACTTTAACCTGTGTTTTGTATCATAAT
AGACATGCGGAATTTTTATTTTGTACTTACTGCGTATTCTTTACAAGGAGTATTGTAAAT
TTTACTGGCAATTATTATTGTACCATTCTAATGTAAGATTTTTACACTTTTTTTCAGAAA
TAAATGCTTAATTTTCAAAGAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               71-804, gnl|bosTau2|chr20 (5886791-5886054)
               

               
               71-804, gnl|Hg17|chr5 (72778559-72777849)
               

               
               71-804, gnl|Mm7|chr13 (95425841-95426558)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-804, gnl|bosTau2|chr20 (5886791-5886054)
               

               
               71-804, gnl|Hg17|chr5 (72778559-72777849)
               

               
               71-804, gnl|Mm7|chr13 (95425841-95426558)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fco (0.157208)
               

               
               ssp (0.13552)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               ssp (0.13552)

	71-804, gnl\|bosTau2\|chr20 (5886791-5886054)
	71-804, gnl\|Hg17\|chr5 (72778559-72777849)
	71-804, gnl\|Mm7\|chr13 (95425841-95426558)