Non-Coding RNA Search

Ss1.1-rpfco0130_p4.5

Sequence:


               
               TTCAGTAATACCAGAAAATGTTTGGTCTAAAAATAATATGAAGAGTAGGGGTGTTAATTA
AGTACATGGACCAAATCATCTTCCTTATTCTGAGAACTTCATAATTGTATAGCAAATGCA
GGTAGGTTTGTTTTTAGTATATAACATGAGTATACAGTGCTTCCTTTTGCAATTATCAGA
ATCATTGCTCTGAAATATCCATCTCTCTCTCAATCTGTAAATTTTAGAGGCGTGTATATA
CAAGAATGTTTTATAAACCATGAATTTCTGTTTTCATTAAGTATTATCAATTCAATAATA
AAAGCAGGTTTACTTTTTTTGCTTAAAAATTTGATTGTAGGGCTTTTGAGAACAATTGAT
TCATAACAATTTAAATGAAGAAGGAAGTGACATGTTAAATGACCCAGTAACTGGCACTAG
ATTTTTCTAGGACTATTTCCCCACCCAAACAAGCTGTATATTTTTCTCTGGAAGTTCGTT
TCCTCTTAGCACTGTGTCGTGTTAAACTGTGTTAACATTTGTGCTGAATGGAGCATGTTT
TTTTAAAATATATATATATATATATAAATTGTTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAGTAATACCAGAAAATGTTTGGTCTAAAAATAATATGAAGAGTAGGGGTGTTAATTA
AGTACATGGACCAAATCATCTTCCTTATTCTGAGAACTTCATAATTGTATAGCAAATGCA
GGTAGGTTTGTTTTTAGTATATAACATGAGTATACAGTGCTTCCTTTTGCAATTATCAGA
ATCATTGCTCTGAAATATCCATCTCTCTCTCAATCTGTAAATTTTAGAGGCGTGTATATA
CAAGAATGTTTTATAAACCATGAATTTCTGTTTTCATTAAGTATTATCAATTCAATAATA
AAAGCAGGTTTACTTTTTTTGCTTAAAAATTTGATTGTAGGGCTTTTGAGAACAATTGAT
TCATAACAATTTAAATGAAGAAGGAAGTGACATGTTAAATGACCCAGTAACTGGCACTAG
ATTTTTCTAGGACTATTTCCCCACCCAAACAAGCTGTATATTTTTCTCTGGAAGTTCGTT
TCCTCTTAGCACTGTGTCGTGTTAAACTGTGTTAACATTTGTGCTGAATGGAGCATGTTT
TTTTAAAATATATATATATATATATAAATTGTTAGA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-554, gnl|bosTau2|chr3 (17986932-17986395)
               

               
               1-554, gnl|Hg17|chr1 (142387716-142387121)
               

               
               1-554, gnl|Mm7|chr3 (97608052-97607587)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-554, gnl|bosTau2|chr3 (17986932-17986395)
               

               
               1-554, gnl|Hg17|chr1 (142387716-142387121)
               

               
               1-554, gnl|Mm7|chr3 (97608052-97607587)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               sag (0.36543)
               

               
               ret (0.257467)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               ret (0.257467)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)

	1-554, gnl\|bosTau2\|chr3 (17986932-17986395)
	1-554, gnl\|Hg17\|chr1 (142387716-142387121)
	1-554, gnl\|Mm7\|chr3 (97608052-97607587)

	sag (0.36543)
	ret (0.257467)
	fco (0.157208)
	fat (0.147427)
	lyg (0.133103)