Non-Coding RNA Search

Ss1.1-rpfco0131_b22.5

Sequence:


               
               TAAACTGAAGACTTATTCTGAAAGGTGAGTAATAGGGGTAACAAAGTTTCTACTTTCTGT
GTTTGTAATTAACCAGATTTTCTCTTCTGTTTATATATGGTTCTGATGTAAAAAGACTCA
ATTATATAAAAGTAGACCTTTTGTAAATAAATATAATTTATTAGAAAAAATGGCATCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAACTGAAGACTTATTCTGAAAGGTGAGTAATAGGGGTAACAAAGTTTCTACTTTCTGT
GTTTGTAATTAACCAGATTTTCTCTTCTGTTTATATATGGTTCTGATGTAAAAAGACTCA
ATTATATAAAAGTAGACCTTTTGTAAATAAATATAATTTATTAGAAAAAATGGCATCTTT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-178, gnl|bosTau2|chr2 (9493710-9493535)
               

               
               1-178, gnl|canFam2|chr19 (56677137-56677498)
               

               
               1-178, gnl|dasNov1|scaffold_7924 (15374-15769)
               

               
               1-178, gnl|echTel1|scaffold_318506 (99181-98826)
               

               
               1-178, gnl|hg17|chr2 (153333737-153334094)
               

               
               1-178, gnl|Hg17|chr2 (153333928-153333746)
               

               
               1-178, gnl|loxAfr1|scaffold_9232 (56670-56317)
               

               
               1-178, gnl|mm7|chr2 (53142027-53142335)
               

               
               1-178, gnl|Mm7|chr2 (53142182-53142039)
               

               
               1-178, gnl|monDom2|scaffold_2 (43920674-43921047)
               

               
               1-178, gnl|oryCun1|scaffold_205537 (9297-8997)
               

               
               1-178, gnl|panTro1|chr13 (42399842-42400195)
               

               
               1-178, gnl|rheMac2|chr12 (16302175-16302529)
               

               
               1-178, gnl|rn3|chr3 (34554172-34554483)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-178, gnl|bosTau2|chr2 (9493710-9493535)
               

               
               1-178, gnl|canFam2|chr19 (56677137-56677498)
               

               
               1-178, gnl|dasNov1|scaffold_7924 (15374-15769)
               

               
               1-178, gnl|echTel1|scaffold_318506 (99181-98826)
               

               
               1-178, gnl|hg17|chr2 (153333737-153334094)
               

               
               1-178, gnl|Hg17|chr2 (153333928-153333746)
               

               
               1-178, gnl|loxAfr1|scaffold_9232 (56670-56317)
               

               
               1-178, gnl|mm7|chr2 (53142027-53142335)
               

               
               1-178, gnl|Mm7|chr2 (53142182-53142039)
               

               
               1-178, gnl|monDom2|scaffold_2 (43920674-43921047)
               

               
               1-178, gnl|oryCun1|scaffold_205537 (9297-8997)
               

               
               1-178, gnl|panTro1|chr13 (42399842-42400195)
               

               
               1-178, gnl|rheMac2|chr12 (16302175-16302529)
               

               
               1-178, gnl|rn3|chr3 (34554172-34554483)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               fco (0.157208)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fco (0.157208)

	1-178, gnl\|bosTau2\|chr2 (9493710-9493535)
	1-178, gnl\|canFam2\|chr19 (56677137-56677498)
	1-178, gnl\|dasNov1\|scaffold_7924 (15374-15769)
	1-178, gnl\|echTel1\|scaffold_318506 (99181-98826)
	1-178, gnl\|hg17\|chr2 (153333737-153334094)
	1-178, gnl\|Hg17\|chr2 (153333928-153333746)
	1-178, gnl\|loxAfr1\|scaffold_9232 (56670-56317)
	1-178, gnl\|mm7\|chr2 (53142027-53142335)
	1-178, gnl\|Mm7\|chr2 (53142182-53142039)
	1-178, gnl\|monDom2\|scaffold_2 (43920674-43921047)
	1-178, gnl\|oryCun1\|scaffold_205537 (9297-8997)
	1-178, gnl\|panTro1\|chr13 (42399842-42400195)
	1-178, gnl\|rheMac2\|chr12 (16302175-16302529)
	1-178, gnl\|rn3\|chr3 (34554172-34554483)