Non-Coding RNA Search

Ss1.1-rpfco0131_b23.5

Sequence:


               
               GTTTTTGATTCCCACCATGGCTATCACACAGTTTCGGTTATTTAAAGTTTGTACCTGCCT
AGCAACAGTATTCTCATTCCTAAAAAGATTAATATGCAGATCTGGCAGAGGACGAAAGTT
AAGTGGAGACCAAATAACTTTGCCAACTACAGTTGATTATTCATCAGTTCCTAAGCAGGC
AGATGTTGAAGAGTGGACTTCCTGGGATGAAGATGCACCCACAAGTGTAAAGATTGAAGG
AGGGAATGGGAATGTGGCAACGCAACAAAATGCTTTAGAACAACTTGAGCCTGACTATTT
TAAAGACATGACACCAACTATAAGGAAAACCCAGAAAATCATTATTAAGAAGAGAGAACC
ATTAAATTTTGGCATCCCAGATGGTAGCACAGGTTTCTCTAGTAGGCTGGCAGCTACACA
AGATATGCCTTTTATTCATCAGTCTCCTGAATTAGGTGATTTGGATACCTGGCAGGAAAA
TACCAATGCATGGGAAGAAGAAGAAGATGCAGCCTGGCAAGCTGAAGAAGTTCTGAGGCA
GCAGAAGATAGCAGACAGGGAAAAGAGAGCAGCAGAACAACAAAGGAAGAAAATGGAAAA
GGAAGCGCAGCGGCTAATGAAGAAGGAACAAAACAAAATTGGTGTGAAACTTTCATAACA
AATGTTCTTCAGTTGTCATAGTGCCAGTGGGAGAAATAGGAGCTCCACAACCCAAGCAAC
ATTTGTGTGGATCTTATAAGAGTATTTTCAGAATACAAATACACTGCTTGATTTTAACAC
ATTCATCAGGCCATCCAGGATTCTCTCACAGTCCCTTGAACTCTTAGTGAATGAGATTCA
GAGAACAAAACAGACTCATGAGACAATATTTTCTTCAACATGCTCCAGCTATAAGACAAT
TGTTTGCTTAAGAGAAATTATTACAAATGGAATATATCAGTACCTCTTTAAGCTAGTACT
ACTAGCTTAATAAATGGGTGTAAATAATTTTATGGTGGGAAAGAACTCTGCTATCTGTAA
TGCTTTCCTTCATTATGCATAATGATAAATAATTTTAAATATTCTTTTGTTGCCATGATT
ACCTGACCTGAATCAGACAAACTTGCAGGGCTTGAACCTTTTATTTTTGTTGTCAGAAGC
TGACGTTGGCATATATTTCCTCTAATTTGAATTGGTATTGTTCATCTTTGATATGATGTT
AAGAAATTTGGTAATTTTGGTTTTCAAGAAAATGATATTAAATGCAATAATTTTATTTAT
CATAAACATTTTGTACATCATTTTTTGTTTTAGATGGAATTTTAATGTTATACATATTTG
TAATTTATGTTGCATGTATAAACGGTGTAAATCTGCTATAATGGCAAATTTGTTTTACAT
TATTATAACTTGTGAGTTTTAAAACCTATGATTAATAGTTTTTCCCCATCATTGTAGATT
TTAAGATGTTATGGTATCTTTAAGTACCCTAGTTCCTCTTGCCAAAGCCATTAATTTAAA
AATGCATAAAGCCTTCAGTTTCTACTATTTCAAAGCATTTAGATGATTTCTGTATCAGTT
TTATATATCTGACATAATGCAGGTTATCTGTGTTGTTGACTAAGGTAACATTATTGATTC
ATTAAATTATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTGATTCCCACCATGGCTATCACACAGTTTCGGTTATTTAAAGTTTGTACCTGCCT
AGCAACAGTATTCTCATTCCTAAAAAGATTAATATGCAGATCTGGCAGAGGACGAAAGTT
AAGTGGAGACCAAATAACTTTGCCAACTACAGTTGATTATTCATCAGTTCCTAAGCAGGC
AGATGTTGAAGAGTGGACTTCCTGGGATGAAGATGCACCCACAAGTGTAAAGATTGAAGG
AGGGAATGGGAATGTGGCAACGCAACAAAATGCTTTAGAACAACTTGAGCCTGACTATTT
TAAAGACATGACACCAACTATAAGGAAAACCCAGAAAATCATTATTAAGAAGAGAGAACC
ATTAAATTTTGGCATCCCAGATGGTAGCACAGGTTTCTCTAGTAGGCTGGCAGCTACACA
AGATATGCCTTTTATTCATCAGTCTCCTGAATTAGGTGATTTGGATACCTGGCAGGAAAA
TACCAATGCATGGGAAGAAGAAGAAGATGCAGCCTGGCAAGCTGAAGAAGTTCTGAGGCA
GCAGAAGATAGCAGACAGGGAAAAGAGAGCAGCAGAACAACAAAGGAAGAAAATGGAAAA
GGAAGCGCAGCGGCTAATGAAGAAGGAACAAAACAAAATTGGTGTGAAACTTTCATAACA
AATGTTCTTCAGTTGTCATAGTGCCAGTGGGAGAAATAGGAGCTCCACAACCCAAGCAAC
ATTTGTGTGGATCTTATAAGAGTATTTTCAGAATACAAATACACTGCTTGATTTTAACAC
ATTCATCAGGCCATCCAGGATTCTCTCACAGTCCCTTGAACTCTTAGTGAATGAGATTCA
GAGAACAAAACAGACTCATGAGACAATATTTTCTTCAACATGCTCCAGCTATAAGACAAT
TGTTTGCTTAAGAGAAATTATTACAAATGGAATATATCAGTACCTCTTTAAGCTAGTACT
ACTAGCTTAATAAATGGGTGTAAATAATTTTATGGTGGGAAAGAACTCTGCTATCTGTAA
TGCTTTCCTTCATTATGCATAATGATAAATAATTTTAAATATTCTTTTGTTGCCATGATT
ACCTGACCTGAATCAGACAAACTTGCAGGGCTTGAACCTTTTATTTTTGTTGTCAGAAGC
TGACGTTGGCATATATTTCCTCTAATTTGAATTGGTATTGTTCATCTTTGATATGATGTT
AAGAAATTTGGTAATTTTGGTTTTCAAGAAAATGATATTAAATGCAATAATTTTATTTAT
CATAAACATTTTGTACATCATTTTTTGTTTTAGATGGAATTTTAATGTTATACATATTTG
TAATTTATGTTGCATGTATAAACGGTGTAAATCTGCTATAATGGCAAATTTGTTTTACAT
TATTATAACTTGTGAGTTTTAAAACCTATGATTAATAGTTTTTCCCCATCATTGTAGATT
TTAAGATGTTATGGTATCTTTAAGTACCCTAGTTCCTCTTGCCAAAGCCATTAATTTAAA
AATGCATAAAGCCTTCAGTTTCTACTATTTCAAAGCATTTAGATGATTTCTGTATCAGTT
TTATATATCTGACATAATGCAGGTTATCTGTGTTGTTGACTAAGGTAACATTATTGATTC
ATTAAATTATAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               RCAS1_CANFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               RCAS1_CANFA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               397-516, no strand, RNAz p=0.588471

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-516, no strand, RNAz p=0.588471

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1080, gnl|bosTau2|chr13 (51530111-51531160)
               

               
               3-1080, gnl|Hg17|chr10 (101447710-101446480)
               

               
               3-1080, gnl|Mm7|chrX (98856828-98857880)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1080, gnl|bosTau2|chr13 (51530111-51531160)
               

               
               3-1080, gnl|Hg17|chr10 (101447710-101446480)
               

               
               3-1080, gnl|Mm7|chrX (98856828-98857880)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               fco (0.471624)
               

               
               aor (0.390549)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               aor (0.390549)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	3-1080, gnl\|bosTau2\|chr13 (51530111-51531160)
	3-1080, gnl\|Hg17\|chr10 (101447710-101446480)
	3-1080, gnl\|Mm7\|chrX (98856828-98857880)

	fco (0.471624)
	aor (0.390549)
	vin (0.332557)
	sme (0.305437)
	kid (0.259471)
	mgp (0.230681)
	tes (0.207814)
	col (0.195008)
	sag (0.182715)
	nco (0.161734)
	tbr (0.154178)
	bfe (0.149858)
	hyp (0.142837)
	csk (0.140746)
	hlv (0.139256)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)
	bla (0.124347)
	cty (0.10408)
	ldo (0.0970026)