Non-Coding RNA Search

Ss1.1-rpfco0131_d18.5

Sequence:


               
               ACAACACTCCAAAGAAATTTCTTTGGAGCTTATGCATAGGGCTATGGGAAGGCAACATTT
TGAGCAATGCCCGCCCCCCCTTTTTCAAACACACAGGAACTGTCTCTAAGTTTGGTGCAG
GTTTGAGGAATAATTAAATTAGGCTTCCATGTTGGTGAATCAGCATATTGATTTTTCTTG
GCAGAAAGCTTTCTGGAAAATGTCTATGAAATGTTTAGTGACTCACATCCTTGTAATTCA
TGAGGGTGTAGAAACCACTGTCCAAAGAGATGGCTATATATTTGCTTTGTAAGCAAAAGG
CATGTATCATAGTTGCATCTAAAATAGCGTCCCATCTTTATCAAAGGCACTGAGTTTTAC
CTGTTTTTATTTCCTAGTGTCCTATTTCCTCAGTAGTCATTTTAGATATGTCATATGCTA
TTTTTATTCCTTTGCCTACAAATAAGTCAATTGTCTGTACTATAAAATGATGCCTGCAAC
TTTGTGGTGATATTATCCCCTAAGTTTAATAGTGAAATAAGGAAATAAAACTACAAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAACACTCCAAAGAAATTTCTTTGGAGCTTATGCATAGGGCTATGGGAAGGCAACATTT
TGAGCAATGCCCGCCCCCCCTTTTTCAAACACACAGGAACTGTCTCTAAGTTTGGTGCAG
GTTTGAGGAATAATTAAATTAGGCTTCCATGTTGGTGAATCAGCATATTGATTTTTCTTG
GCAGAAAGCTTTCTGGAAAATGTCTATGAAATGTTTAGTGACTCACATCCTTGTAATTCA
TGAGGGTGTAGAAACCACTGTCCAAAGAGATGGCTATATATTTGCTTTGTAAGCAAAAGG
CATGTATCATAGTTGCATCTAAAATAGCGTCCCATCTTTATCAAAGGCACTGAGTTTTAC
CTGTTTTTATTTCCTAGTGTCCTATTTCCTCAGTAGTCATTTTAGATATGTCATATGCTA
TTTTTATTCCTTTGCCTACAAATAAGTCAATTGTCTGTACTATAAAATGATGCCTGCAAC
TTTGTGGTGATATTATCCCCTAAGTTTAATAGTGAAATAAGGAAATAAAACTACAAACAA

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-540, gnl|bosTau2|chr28 (7653011-7653556)
               

               
               1-540, gnl|Hg17|chr1 (236404253-236404786)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr28 (7653011-7653556)
               

               
               1-540, gnl|Hg17|chr1 (236404253-236404786)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fhi (0.339155)
               

               
               fco (0.314416)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               lyg (0.133103)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               fco (0.314416)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               lyg (0.133103)
               

               
               ecc (0.115035)

	1-540, gnl\|bosTau2\|chr28 (7653011-7653556)
	1-540, gnl\|Hg17\|chr1 (236404253-236404786)

	fhi (0.339155)
	fco (0.314416)
	fcc (0.197785)
	rec (0.17307)
	lyg (0.133103)
	ecc (0.115035)