Non-Coding RNA Search

Ss1.1-rpfco0131_l23.5.5

Sequence:


               
               CAAAAGCTATGGAAGATATCTTTGTTCTTGTTTGCTGCTATTTCCTGTCCTATTTTAAAA
AATATAAATACATAGAAATGGTGCATCTTAACATTTGTTTGTACATGTATAAATGTCTTG
TATTTTAATTCATTTTTAGCATGTAGCAACACGAATTGTTTAAGGGTAAGCCACAACATC
TAGAAATCACTCCCAGATACGAACAATAAAGGAAAAAATGGTACCGATGTAGGAGGAAAC
AAAGCCTCTGTCCACTGGGTTTTCCCTGCAGCCTACAGTGACTTTCACTGACAAACAAGG
AGAAACTATCACTATAAACAAAGTCATCCTTGTTGGGAGATTGCCACAGCCTGCTGCTTA
GTCGAGTTACCAGACATCCTCCATTTGCGAAGCAGCGAACGTTGAATCTCAGGGATGGTC
CTCAACTGGATCCAAGTGTAACGAGCCCTGTTTGAATAATGAAGGGGGTGGGGAGAGCGA
TCCATCCACAATCCGGAAGCAGATTTGCAGAGGTTTCCTGCACTGTTGTTTTGACACTGC
CCTGTTGATGCCCTTTCTTCCTGTTTCCTCGGTTTTCTCTGTCTGCTGTCTAACCCTGTG
CCTTGCCTGGGATAAGTACAATGTTGAGGTAACTGGTTTGGATTGTAAGTAGAGGAATTT
ATTAATTGGTTTAGAGGTTCACTGCTGCTTTGTCACTTTCTCAATCAAACTGGCCACTTA
TTTAAGAAATAAAAAGCTGGTAGAATTGCATCCTCAGATGATGATTGACCTTCTGTGTGT
GTGAAAACAGACATTCCAGTGCCACCCTGATACAACGTGCCCAAGAAGTCCTAGCTGCAC
TCTTGAAAGTGCGAGCCATGGAAACCGGCTTAGACATGGCTTGGAGAATAGTTGCTTTTT
GACATGGCATCTTGCACTTTAGGAGACTGAGACCGTCCTGTTTTGTCCATGTGTGGTGTG
ACCAATGGTGTGCCCAGAGCACTGCTCTCAAACTCACTAGTGTTAGCACGTCGTCCGGGC
TGTGGGCGCTCGCTGTAGTCTTCGGAAAGCTTTGGCTCTAGATCACCAAGCCCAGTCTCC
TTAATGTCAGTGCCCTGCTCTCCTGTTTGCCTCTTTCTGTTTCTATGTGAACTTCCAGGT
AATATCACTCATTTTAAATAGTTTTTTTTTTTTAATTTATTTAAAGAAAAACTATTTAGA
AGTAAAGGACGTTTTATTTTGTTGACAGTGGTGGCTTGATAATCCTTAAGCAACTGAAGC
TAAAATTGTTAAATTGAAGGAAAAGGCCCTTAAAATGGTTATTCTCTGTCCAGCTGTATA
TAAGTCCGATGTGTTACTAATCTAGATGATGCAAAGAAGAATCTCCTGGTAGAGACTCGA
CATGTACAAAATTGGTGGAAAAGGTTTTGGTTTTTTTCAGAGGGGCGGGGGGAGGGCAAG
CTGGATTTACAAGTCACGACTGGACCGAACTGGCCTTTTTATCTTTCCACTGTATCATGT
AAGTAGCTGCTTTCTTGTCCTGCCTACCCTTCAGGCATCCCTCAAGCTCACTCTGAAGAT
GGTAGAAACAAACATAATCTTCGAGTTCGAAGTTGATCCTGACACTGACATGAAGGCGAG
CGTTGATTTCATAATGAACGTCACAGAGGTGGTGATTGGAGAAAACAGTTCCCCAGATTG
TAAGAGTTAACTGAAGATATTGACACAATTTTAAAAAATCAGTAAAGGAATGTATATAAT
ATTGCTCTTGTGTTTTACAGTAAGATTTGTTGCTCTCAGACTGTGTAAAACAAGATTTAT
TCATGTTTTCTGCATATTAAAAAATCTTATTGTACCAATTGGTAAACTATTAAATGCCTA
TAAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAGCTATGGAAGATATCTTTGTTCTTGTTTGCTGCTATTTCCTGTCCTATTTTAAAA
AATATAAATACATAGAAATGGTGCATCTTAACATTTGTTTGTACATGTATAAATGTCTTG
TATTTTAATTCATTTTTAGCATGTAGCAACACGAATTGTTTAAGGGTAAGCCACAACATC
TAGAAATCACTCCCAGATACGAACAATAAAGGAAAAAATGGTACCGATGTAGGAGGAAAC
AAAGCCTCTGTCCACTGGGTTTTCCCTGCAGCCTACAGTGACTTTCACTGACAAACAAGG
AGAAACTATCACTATAAACAAAGTCATCCTTGTTGGGAGATTGCCACAGCCTGCTGCTTA
GTCGAGTTACCAGACATCCTCCATTTGCGAAGCAGCGAACGTTGAATCTCAGGGATGGTC
CTCAACTGGATCCAAGTGTAACGAGCCCTGTTTGAATAATGAAGGGGGTGGGGAGAGCGA
TCCATCCACAATCCGGAAGCAGATTTGCAGAGGTTTCCTGCACTGTTGTTTTGACACTGC
CCTGTTGATGCCCTTTCTTCCTGTTTCCTCGGTTTTCTCTGTCTGCTGTCTAACCCTGTG
CCTTGCCTGGGATAAGTACAATGTTGAGGTAACTGGTTTGGATTGTAAGTAGAGGAATTT
ATTAATTGGTTTAGAGGTTCACTGCTGCTTTGTCACTTTCTCAATCAAACTGGCCACTTA
TTTAAGAAATAAAAAGCTGGTAGAATTGCATCCTCAGATGATGATTGACCTTCTGTGTGT
GTGAAAACAGACATTCCAGTGCCACCCTGATACAACGTGCCCAAGAAGTCCTAGCTGCAC
TCTTGAAAGTGCGAGCCATGGAAACCGGCTTAGACATGGCTTGGAGAATAGTTGCTTTTT
GACATGGCATCTTGCACTTTAGGAGACTGAGACCGTCCTGTTTTGTCCATGTGTGGTGTG
ACCAATGGTGTGCCCAGAGCACTGCTCTCAAACTCACTAGTGTTAGCACGTCGTCCGGGC
TGTGGGCGCTCGCTGTAGTCTTCGGAAAGCTTTGGCTCTAGATCACCAAGCCCAGTCTCC
TTAATGTCAGTGCCCTGCTCTCCTGTTTGCCTCTTTCTGTTTCTATGTGAACTTCCAGGT
AATATCACTCATTTTAAATAGTTTTTTTTTTTTAATTTATTTAAAGAAAAACTATTTAGA
AGTAAAGGACGTTTTATTTTGTTGACAGTGGTGGCTTGATAATCCTTAAGCAACTGAAGC
TAAAATTGTTAAATTGAAGGAAAAGGCCCTTAAAATGGTTATTCTCTGTCCAGCTGTATA
TAAGTCCGATGTGTTACTAATCTAGATGATGCAAAGAAGAATCTCCTGGTAGAGACTCGA
CATGTACAAAATTGGTGGAAAAGGTTTTGGTTTTTTTCAGAGGGGCGGGGGGAGGGCAAG
CTGGATTTACAAGTCACGACTGGACCGAACTGGCCTTTTTATCTTTCCACTGTATCATGT
AAGTAGCTGCTTTCTTGTCCTGCCTACCCTTCAGGCATCCCTCAAGCTCACTCTGAAGAT
GGTAGAAACAAACATAATCTTCGAGTTCGAAGTTGATCCTGACACTGACATGAAGGCGAG
CGTTGATTTCATAATGAACGTCACAGAGGTGGTGATTGGAGAAAACAGTTCCCCAGATTG
TAAGAGTTAACTGAAGATATTGACACAATTTTAAAAAATCAGTAAAGGAATGTATATAAT
ATTGCTCTTGTGTTTTACAGTAAGATTTGTTGCTCTCAGACTGTGTAAAACAAGATTTAT
TCATGTTTTCTGCATATTAAAAAATCTTATTGTACCAATTGGTAAACTATTAAATGCCTA
TAAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1751-1868, - strand, RNAz p=0.712735

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1751-1868, - strand, RNAz p=0.712735

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1868, gnl|bosTau2|chr19 (18147572-18149445)
               

               
               1-1868, gnl|Hg17|chr17 (2533819-2535659)
               

               
               1-1868, gnl|Mm7|chr11 (74757321-74755523)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1868, gnl|bosTau2|chr19 (18147572-18149445)
               

               
               1-1868, gnl|Hg17|chr17 (2533819-2535659)
               

               
               1-1868, gnl|Mm7|chr11 (74757321-74755523)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

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               fco (0.78604)
               

               
               cbe (0.717703)
               

               
               fcc (0.593354)
               

               
               fce (0.543183)
               

               
               amn (0.417711)
               

               
               bla (0.373042)
               

               
               tra (0.369276)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               pgl (0.236967)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               cmu (0.186393)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               eli (0.151814)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.78604)
               

               
               cbe (0.717703)
               

               
               fcc (0.593354)
               

               
               fce (0.543183)
               

               
               amn (0.417711)
               

               
               bla (0.373042)
               

               
               tra (0.369276)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               pgl (0.236967)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               cmu (0.186393)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               eli (0.151814)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	1-1868, gnl\|bosTau2\|chr19 (18147572-18149445)
	1-1868, gnl\|Hg17\|chr17 (2533819-2535659)
	1-1868, gnl\|Mm7\|chr11 (74757321-74755523)

	fco (0.78604)
	cbe (0.717703)
	fcc (0.593354)
	fce (0.543183)
	amn (0.417711)
	bla (0.373042)
	tra (0.369276)
	vin (0.332557)
	tbr (0.308356)
	pgl (0.236967)
	jca (0.22792)
	nms (0.213858)
	cmu (0.186393)
	duo (0.172801)
	eye (0.170503)
	cut (0.169924)
	eli (0.151814)
	bfe (0.149858)
	spl (0.143184)
	csk (0.140746)
	pla (0.133672)
	lyg (0.133103)
	nmm (0.132802)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	clu (0.119646)
	ebs (0.118301)
	med (0.116252)
	spc (0.113366)
	ldo (0.0970026)