Non-Coding RNA Search

Ss1.1-rpfco0133_l17.5

Sequence:


               
               CATTTGCAAAAATGTGTGTGCCCCAAACACTGTGAAACAGCTACCAAAATTTGTAGGAAT
GCAGCATCTTGAACCTTTCTGGAAAGAAAAGGTAACTTTTTTTTTTTTAACAAGTCCTTA
GGAACTAAAGGCCTCCTCTACCCTCGCCTCCCTCGCCTCGAAAGGCGTCTAAGAGCTCGC
TGGTGATCACCTCCTTGCTGACCAGCAGTCCCTGGGGTGACACTCGGGCAACGAACTATC
AAAATAAACAATAGGCTAATTTGTAGGGTCCACGGATCTGTATCCAAAGTTTGAATGGGC
TCGCTTTTGGAAGGAGAAAGAATTTCAAGTTAACAGTATCCACCGTCATTACAGCTAATG
AGTTATAAATTTAAAAATACTTTATATGTATGACATATAAAAACTTTGTAAAATGCTCAA
GTGCAATAACTTAAAGAGGTCTTAACTTTGCATTTATAACTTATAAATATTGTACATGTG
TGTAATTTTTTCACGTATTCATTTGCAGTCTTTGTATTTAAAAGAAATCTTTACTGTTAT
GATTGTATAATACCACAAATCATTTACTCTAACCTAGGCAAGTTGTAAATAAATTCATAA
TTCAAACAGCCAGTATATATGCATATATGGGTGTTACACATTGCAGAATCTCTGTTTTAC
TTACATGCTTAGAGCCGCAAGAAACCTTTGTTGATATGTAATTATACATTTACAGCATAT
ATATATATATTGTGATACATGAAATCTATTTAGAGATGTTCATAATTTTAACGGCTATCC
TTTGGTGTGAATAATTGAATACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTGCAAAAATGTGTGTGCCCCAAACACTGTGAAACAGCTACCAAAATTTGTAGGAAT
GCAGCATCTTGAACCTTTCTGGAAAGAAAAGGTAACTTTTTTTTTTTTAACAAGTCCTTA
GGAACTAAAGGCCTCCTCTACCCTCGCCTCCCTCGCCTCGAAAGGCGTCTAAGAGCTCGC
TGGTGATCACCTCCTTGCTGACCAGCAGTCCCTGGGGTGACACTCGGGCAACGAACTATC
AAAATAAACAATAGGCTAATTTGTAGGGTCCACGGATCTGTATCCAAAGTTTGAATGGGC
TCGCTTTTGGAAGGAGAAAGAATTTCAAGTTAACAGTATCCACCGTCATTACAGCTAATG
AGTTATAAATTTAAAAATACTTTATATGTATGACATATAAAAACTTTGTAAAATGCTCAA
GTGCAATAACTTAAAGAGGTCTTAACTTTGCATTTATAACTTATAAATATTGTACATGTG
TGTAATTTTTTCACGTATTCATTTGCAGTCTTTGTATTTAAAAGAAATCTTTACTGTTAT
GATTGTATAATACCACAAATCATTTACTCTAACCTAGGCAAGTTGTAAATAAATTCATAA
TTCAAACAGCCAGTATATATGCATATATGGGTGTTACACATTGCAGAATCTCTGTTTTAC
TTACATGCTTAGAGCCGCAAGAAACCTTTGTTGATATGTAATTATACATTTACAGCATAT
ATATATATATTGTGATACATGAAATCTATTTAGAGATGTTCATAATTTTAACGGCTATCC
TTTGGTGTGAATAATTGAATACAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               610-721, - strand, RNAz p=0.554342

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               610-721, - strand, RNAz p=0.554342

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-804, gnl|bosTau2|chr9 (62857321-62858094)
               

               
               1-804, gnl|Hg17|chr6 (165711990-165711202)
               

               
               1-804, gnl|Mm7|chr17 (7700710-7701487)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr9 (62857321-62858094)
               

               
               1-804, gnl|Hg17|chr6 (165711990-165711202)
               

               
               1-804, gnl|Mm7|chr17 (7700710-7701487)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               tra (0.123092)

	1-804, gnl\|bosTau2\|chr9 (62857321-62858094)
	1-804, gnl\|Hg17\|chr6 (165711990-165711202)
	1-804, gnl\|Mm7\|chr17 (7700710-7701487)