Non-Coding RNA Search

Ss1.1-rpfco0133_m17.5

Sequence:


               
               AAATGATTTTCTGTAATTGTTTCTTTTAAATAAAAATTTATTGGAGTGCAATATGAGGAT
ATAATATACAGTGCATTATCCAAAAGAAAAAGTAGATAATTGATGGACTAGGATGTAGTG
GTGATAATACCTTTTTGTTTTTAACTTTCAGTATTCAGATCATAGTAAAATATTACTGTA
GGAAACCTTGGTATATTCTTGTGGCTACTCTTTTTAATTGAACTGAGATTGTGTGTGGCA
GCTCTCTTTGGGGGGGTATTATGTGTGTGCAACTTTTAACCAGAGGTGTTAAAGTCTAGC
CGAACTCCACGTGCAACAAGAACATAACAGTATTTAAGAAGTTTTTCTTTCCGCTTCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGATTTTCTGTAATTGTTTCTTTTAAATAAAAATTTATTGGAGTGCAATATGAGGAT
ATAATATACAGTGCATTATCCAAAAGAAAAAGTAGATAATTGATGGACTAGGATGTAGTG
GTGATAATACCTTTTTGTTTTTAACTTTCAGTATTCAGATCATAGTAAAATATTACTGTA
GGAAACCTTGGTATATTCTTGTGGCTACTCTTTTTAATTGAACTGAGATTGTGTGTGGCA
GCTCTCTTTGGGGGGGTATTATGTGTGTGCAACTTTTAACCAGAGGTGTTAAAGTCTAGC
CGAACTCCACGTGCAACAAGAACATAACAGTATTTAAGAAGTTTTTCTTTCCGCTTCTCA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-360, gnl|bosTau2|chr10 (3556336-3556693)
               

               
               1-360, gnl|canFam2|chr3 (31186768-31186007)
               

               
               1-360, gnl|dasNov1|scaffold_24470 (38224-37500)
               

               
               1-360, gnl|echTel1|scaffold_313447 (49588-48777)
               

               
               1-360, gnl|hg17|chr5 (77807668-77808407)
               

               
               1-360, gnl|Hg17|chr5 (77807931-77808266)
               

               
               1-360, gnl|mm7|chr13 (91266566-91265804)
               

               
               1-360, gnl|Mm7|chr13 (91266304-91265911)
               

               
               1-360, gnl|monDom2|scaffold_27 (37828810-37827926)
               

               
               1-360, gnl|oryCun1|scaffold_144119 (8576-7865)
               

               
               1-360, gnl|panTro1|chr4 (37408622-37407883)
               

               
               1-360, gnl|rheMac2|chr6 (74730908-74731654)
               

               
               1-360, gnl|rn3|chr2 (24418405-24417645)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-360, gnl|bosTau2|chr10 (3556336-3556693)
               

               
               1-360, gnl|canFam2|chr3 (31186768-31186007)
               

               
               1-360, gnl|dasNov1|scaffold_24470 (38224-37500)
               

               
               1-360, gnl|echTel1|scaffold_313447 (49588-48777)
               

               
               1-360, gnl|hg17|chr5 (77807668-77808407)
               

               
               1-360, gnl|Hg17|chr5 (77807931-77808266)
               

               
               1-360, gnl|mm7|chr13 (91266566-91265804)
               

               
               1-360, gnl|Mm7|chr13 (91266304-91265911)
               

               
               1-360, gnl|monDom2|scaffold_27 (37828810-37827926)
               

               
               1-360, gnl|oryCun1|scaffold_144119 (8576-7865)
               

               
               1-360, gnl|panTro1|chr4 (37408622-37407883)
               

               
               1-360, gnl|rheMac2|chr6 (74730908-74731654)
               

               
               1-360, gnl|rn3|chr2 (24418405-24417645)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               cbl (0.114797)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               cbl (0.114797)

	1-360, gnl\|bosTau2\|chr10 (3556336-3556693)
	1-360, gnl\|canFam2\|chr3 (31186768-31186007)
	1-360, gnl\|dasNov1\|scaffold_24470 (38224-37500)
	1-360, gnl\|echTel1\|scaffold_313447 (49588-48777)
	1-360, gnl\|hg17\|chr5 (77807668-77808407)
	1-360, gnl\|Hg17\|chr5 (77807931-77808266)
	1-360, gnl\|mm7\|chr13 (91266566-91265804)
	1-360, gnl\|Mm7\|chr13 (91266304-91265911)
	1-360, gnl\|monDom2\|scaffold_27 (37828810-37827926)
	1-360, gnl\|oryCun1\|scaffold_144119 (8576-7865)
	1-360, gnl\|panTro1\|chr4 (37408622-37407883)
	1-360, gnl\|rheMac2\|chr6 (74730908-74731654)
	1-360, gnl\|rn3\|chr2 (24418405-24417645)