Non-Coding RNA Search

Ss1.1-rpfco0133_p24.5

Sequence:


               
               AAATCACAAGTTACCAAGACAAATAGCATGCTGGGGTATACTAACAAATCAACGTGTGGG
ATTAAGGCCATGTTATGTGTCTCAGAAGTATCCAAACACTCTGACTCTTGATTTGAAAAG
TGTACACTTGGAACAGATGTTGGGATCCATGCAAGTGCCTAATATCTTTGTGTTTTATTT
ATAGTGTAATGGCTCCATGGTAACTAAATGGCTATTAATCACCTTTTTTTTTGATTAATT
GACACGTTAACTTCTCCAAAATAATTTTAACCAAAGATGACAATTATATAAGGAGTAAGA
CTTTTTTAAGGACTCAACTACCATCTTGAAATAGCTGAATCACTTTGAAAGTAGTAGTTT
TAGGTTTTTGGTAAACATTTTAGCAAATTGCTGTTTTAGAAGAGAAACCTGACTGTTTGG
TAAAGAAGATGGGGCCTTTGTTAAAGCCAGAGTCATAAGCTACGTCTTTAGGTCTCTGAC
CTCACAGCCTATTCATAGCTGCAGGCATTTCAAATGGAACCAGGGGACAGAATATATCTG
GAACAGTTCATATCCTTCATTGCTTTTATGGGACGACACCCTGACAGCATCATCTTCATG
TATAAATAAATGTATATTATTGCTGCTCTGGTGCTGGATAAGAAAATATGCTTTTATATT
TTCTAGAAGGAAATGCTTTATTCTAATCCTCAAAACTTTTAGGTCTCAACTTTTTAAATG
TATGATTCATAAAATATTTATGAAGTTATATGCATGCTGTTAAACTGCATAAACCAAGAT
TCTTTGAAATTGCAATTTAGAAAGATCATCTGATTCTTGCCACACACAGAGAACTTGTGA
AATAATATCCAGCCAGACTATTAGATATGGAAGTGAATAAAAATGACAGTGAGGAATCCC
TGACTTGGGCTTCATTTTTTGCTGAAAGAAATAACCTACCTAAACAAAGTAGTTGTCAGA
ATTGAAAGAATACAAAAATATGCTTTATAAATTCTAAAATATAATATAAATGCTTCACTT
TTGTCCATTTCACTGACAAATAAATAGCAGTTGTAATGCTTAAAACATTTCTGACAACGT
GTATGTTGGGACTTGGGAAGATTAAAAATATTGTTCTCTTTAACAAAGCACTGGAGAAAC
AAGTAGCATAATAAGGAAAAATATTTATATAAATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATCACAAGTTACCAAGACAAATAGCATGCTGGGGTATACTAACAAATCAACGTGTGGG
ATTAAGGCCATGTTATGTGTCTCAGAAGTATCCAAACACTCTGACTCTTGATTTGAAAAG
TGTACACTTGGAACAGATGTTGGGATCCATGCAAGTGCCTAATATCTTTGTGTTTTATTT
ATAGTGTAATGGCTCCATGGTAACTAAATGGCTATTAATCACCTTTTTTTTTGATTAATT
GACACGTTAACTTCTCCAAAATAATTTTAACCAAAGATGACAATTATATAAGGAGTAAGA
CTTTTTTAAGGACTCAACTACCATCTTGAAATAGCTGAATCACTTTGAAAGTAGTAGTTT
TAGGTTTTTGGTAAACATTTTAGCAAATTGCTGTTTTAGAAGAGAAACCTGACTGTTTGG
TAAAGAAGATGGGGCCTTTGTTAAAGCCAGAGTCATAAGCTACGTCTTTAGGTCTCTGAC
CTCACAGCCTATTCATAGCTGCAGGCATTTCAAATGGAACCAGGGGACAGAATATATCTG
GAACAGTTCATATCCTTCATTGCTTTTATGGGACGACACCCTGACAGCATCATCTTCATG
TATAAATAAATGTATATTATTGCTGCTCTGGTGCTGGATAAGAAAATATGCTTTTATATT
TTCTAGAAGGAAATGCTTTATTCTAATCCTCAAAACTTTTAGGTCTCAACTTTTTAAATG
TATGATTCATAAAATATTTATGAAGTTATATGCATGCTGTTAAACTGCATAAACCAAGAT
TCTTTGAAATTGCAATTTAGAAAGATCATCTGATTCTTGCCACACACAGAGAACTTGTGA
AATAATATCCAGCCAGACTATTAGATATGGAAGTGAATAAAAATGACAGTGAGGAATCCC
TGACTTGGGCTTCATTTTTTGCTGAAAGAAATAACCTACCTAAACAAAGTAGTTGTCAGA
ATTGAAAGAATACAAAAATATGCTTTATAAATTCTAAAATATAATATAAATGCTTCACTT
TTGTCCATTTCACTGACAAATAAATAGCAGTTGTAATGCTTAAAACATTTCTGACAACGT
GTATGTTGGGACTTGGGAAGATTAAAAATATTGTTCTCTTTAACAAAGCACTGGAGAAAC
AAGTAGCATAATAAGGAAAAATATTTATATAAATTG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-1169, gnl|bosTau2|chr23 (16052320-16053450)
               

               
               1-1169, gnl|Hg17|chr9 (20988399-20989597)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1169, gnl|bosTau2|chr23 (16052320-16053450)
               

               
               1-1169, gnl|Hg17|chr9 (20988399-20989597)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               fco (0.157208)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)

	1-1169, gnl\|bosTau2\|chr23 (16052320-16053450)
	1-1169, gnl\|Hg17\|chr9 (20988399-20989597)