Non-Coding RNA Search

Ss1.1-rpfco0134_f4.5

Sequence:


               
               TGCTACTCCATATTGTAGGATGCCTTTTTATTTCAATTGGTAACTTTCTGTTTTGTTCTT
CCTAATTATTCTCCCAAGATCCCACACTGCAGCTTTATCTTTAGGCTTATGAAAGGTAAC
CCGTGGTTACCGGCTCTCCAAGTGATTCTGTTCTTCTCCATTTTTGGCAGTTAATTTGCA
GAAGTAACTGACAGCTGACACCATATGAAAACCTATGTATAAAATATTGGCATGTAAACA
GCACAGACACTGTCACACACTCTGTGCCCTGTTTTGTTGTTGACAATGAACCACCATTAT
GTGACTCTTCATATAACCCTCTTTTCTACGGCAGCATTAAAATTGTCTTTTTGCTATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTACTCCATATTGTAGGATGCCTTTTTATTTCAATTGGTAACTTTCTGTTTTGTTCTT
CCTAATTATTCTCCCAAGATCCCACACTGCAGCTTTATCTTTAGGCTTATGAAAGGTAAC
CCGTGGTTACCGGCTCTCCAAGTGATTCTGTTCTTCTCCATTTTTGGCAGTTAATTTGCA
GAAGTAACTGACAGCTGACACCATATGAAAACCTATGTATAAAATATTGGCATGTAAACA
GCACAGACACTGTCACACACTCTGTGCCCTGTTTTGTTGTTGACAATGAACCACCATTAT
GTGACTCTTCATATAACCCTCTTTTCTACGGCAGCATTAAAATTGTCTTTTTGCTATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               108-227, - strand, RNAz p=0.981763

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               108-227, - strand, RNAz p=0.981763

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-359, gnl|bosTau2|chr18 (34912873-34913221)
               

               
               1-359, gnl|canFam2|chr1 (123371465-123370931)
               

               
               1-359, gnl|danRer3|chr7 (37562542-37563078)
               

               
               1-359, gnl|dasNov1|scaffold_3665 (56682-57216)
               

               
               1-359, gnl|echTel1|scaffold_305443 (8093-7574)
               

               
               1-359, gnl|fr1|chrUn (172572567-172573182)
               

               
               1-359, gnl|galGal2|chr11 (9423443-9423976)
               

               
               1-359, gnl|hg17|chr19 (36457634-36458167)
               

               
               1-359, gnl|Hg17|chr19 (36458049-36457691)
               

               
               1-359, gnl|loxAfr1|scaffold_49711 (9429-8895)
               

               
               1-359, gnl|mm7|chr7 (33664685-33664105)
               

               
               1-359, gnl|Mm7|chr7 (33664220-33664626)
               

               
               1-359, gnl|monDom2|scaffold_35 (5930414-5929881)
               

               
               1-359, gnl|oryCun1|scaffold_198133 (5866-6384)
               

               
               1-359, gnl|panTro1|chr20 (32947743-32948276)
               

               
               1-359, gnl|rheMac2|chr19 (37781658-37782191)
               

               
               1-359, gnl|rn3|chr1 (89314483-89313911)
               

               
               1-359, gnl|tetNig1|chrUn_random (54361754-54361163)
               

               
               1-359, gnl|xenTro1|scaffold_83 (1503075-1502540)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-359, gnl|bosTau2|chr18 (34912873-34913221)
               

               
               1-359, gnl|canFam2|chr1 (123371465-123370931)
               

               
               1-359, gnl|danRer3|chr7 (37562542-37563078)
               

               
               1-359, gnl|dasNov1|scaffold_3665 (56682-57216)
               

               
               1-359, gnl|echTel1|scaffold_305443 (8093-7574)
               

               
               1-359, gnl|fr1|chrUn (172572567-172573182)
               

               
               1-359, gnl|galGal2|chr11 (9423443-9423976)
               

               
               1-359, gnl|hg17|chr19 (36457634-36458167)
               

               
               1-359, gnl|Hg17|chr19 (36458049-36457691)
               

               
               1-359, gnl|loxAfr1|scaffold_49711 (9429-8895)
               

               
               1-359, gnl|mm7|chr7 (33664685-33664105)
               

               
               1-359, gnl|Mm7|chr7 (33664220-33664626)
               

               
               1-359, gnl|monDom2|scaffold_35 (5930414-5929881)
               

               
               1-359, gnl|oryCun1|scaffold_198133 (5866-6384)
               

               
               1-359, gnl|panTro1|chr20 (32947743-32948276)
               

               
               1-359, gnl|rheMac2|chr19 (37781658-37782191)
               

               
               1-359, gnl|rn3|chr1 (89314483-89313911)
               

               
               1-359, gnl|tetNig1|chrUn_random (54361754-54361163)
               

               
               1-359, gnl|xenTro1|scaffold_83 (1503075-1502540)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               col (0.195008)
               

               
               fco (0.157208)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               fco (0.157208)

	1-359, gnl\|bosTau2\|chr18 (34912873-34913221)
	1-359, gnl\|canFam2\|chr1 (123371465-123370931)
	1-359, gnl\|danRer3\|chr7 (37562542-37563078)
	1-359, gnl\|dasNov1\|scaffold_3665 (56682-57216)
	1-359, gnl\|echTel1\|scaffold_305443 (8093-7574)
	1-359, gnl\|fr1\|chrUn (172572567-172573182)
	1-359, gnl\|galGal2\|chr11 (9423443-9423976)
	1-359, gnl\|hg17\|chr19 (36457634-36458167)
	1-359, gnl\|Hg17\|chr19 (36458049-36457691)
	1-359, gnl\|loxAfr1\|scaffold_49711 (9429-8895)
	1-359, gnl\|mm7\|chr7 (33664685-33664105)
	1-359, gnl\|Mm7\|chr7 (33664220-33664626)
	1-359, gnl\|monDom2\|scaffold_35 (5930414-5929881)
	1-359, gnl\|oryCun1\|scaffold_198133 (5866-6384)
	1-359, gnl\|panTro1\|chr20 (32947743-32948276)
	1-359, gnl\|rheMac2\|chr19 (37781658-37782191)
	1-359, gnl\|rn3\|chr1 (89314483-89313911)
	1-359, gnl\|tetNig1\|chrUn_random (54361754-54361163)
	1-359, gnl\|xenTro1\|scaffold_83 (1503075-1502540)