Non-Coding RNA Search

Ss1.1-rpfco0134_m2.5

Sequence:


               
               CCACTCAGCATTTCTGTCAAAGCAGTATGAAATGAACTAAAGTCAGTATATGGTTTGGGG
AAATCAAATGGCCTTTTTATGTATGTATATTTGGTATCATGATCCATGGAAAATAATATA
TTTTGGAGCTCTAAAATGTTGTAAAGAGTCAATCCTAAGTATCCTTCACAGCTGCCAGAA
GTTAATGATGGTACCAAGCAAAGTATGGTCATTGGAGGAGGGTGATTTTTTTTTTTTTTT
AAGTAGAACAACAAAACCAACAACAAATACTTATAAAATTATAATAACTAATTTGTAAAT
AATTTTTACTTTTTAAAATTTAAAGTGTTTTTCAGTGTTAAAATTGAGTAAAACTATTTG
CAACTGTTGTAAGAAGGAAAGATGAAAACTATTAAGGAATTGAAGCAGGCAGGGACATAT
GTGATCCCATCATCTTCTGAAAAATTGTACTGTTTTAATATTGTATTACAATATCAATGT
GAATATCTTGACTTCTGTTACAAGTTCTGCACTGTATTAAACATGTAAATTCATTGTTTG
TCTGATTAGCCAAGCTAACCTCCCTAATGGAGAGGTATCCATGTTTGAAAAATTGTGTAA
CTCAATAACTGATTTGTTCTGATGTTGTAACTTAGAAGTGATTTGGAAGGAAGCATGGTA
TATGAGATGATGTCTGTTCTTTTGTGCCAGCTCTGTATGATGTTTGTAAGATCATGTTTG
TAAGACATGAATAAATTGCTGCTTTTGCTCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACTCAGCATTTCTGTCAAAGCAGTATGAAATGAACTAAAGTCAGTATATGGTTTGGGG
AAATCAAATGGCCTTTTTATGTATGTATATTTGGTATCATGATCCATGGAAAATAATATA
TTTTGGAGCTCTAAAATGTTGTAAAGAGTCAATCCTAAGTATCCTTCACAGCTGCCAGAA
GTTAATGATGGTACCAAGCAAAGTATGGTCATTGGAGGAGGGTGATTTTTTTTTTTTTTT
AAGTAGAACAACAAAACCAACAACAAATACTTATAAAATTATAATAACTAATTTGTAAAT
AATTTTTACTTTTTAAAATTTAAAGTGTTTTTCAGTGTTAAAATTGAGTAAAACTATTTG
CAACTGTTGTAAGAAGGAAAGATGAAAACTATTAAGGAATTGAAGCAGGCAGGGACATAT
GTGATCCCATCATCTTCTGAAAAATTGTACTGTTTTAATATTGTATTACAATATCAATGT
GAATATCTTGACTTCTGTTACAAGTTCTGCACTGTATTAAACATGTAAATTCATTGTTTG
TCTGATTAGCCAAGCTAACCTCCCTAATGGAGAGGTATCCATGTTTGAAAAATTGTGTAA
CTCAATAACTGATTTGTTCTGATGTTGTAACTTAGAAGTGATTTGGAAGGAAGCATGGTA
TATGAGATGATGTCTGTTCTTTTGTGCCAGCTCTGTATGATGTTTGTAAGATCATGTTTG
TAAGACATGAATAAATTGCTGCTTTTGCTCAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               28-752, gnl|bosTau2|chr24 (12105535-12106242)
               

               
               28-752, gnl|Hg17|chr18 (39102585-39101855)
               

               
               28-752, gnl|Mm7|chr18 (31830207-31829507)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-752, gnl|bosTau2|chr24 (12105535-12106242)
               

               
               28-752, gnl|Hg17|chr18 (39102585-39101855)
               

               
               28-752, gnl|Mm7|chr18 (31830207-31829507)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cbe (0.478469)
               

               
               sug (0.381874)
               

               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               sug (0.381874)
               

               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	28-752, gnl\|bosTau2\|chr24 (12105535-12106242)
	28-752, gnl\|Hg17\|chr18 (39102585-39101855)
	28-752, gnl\|Mm7\|chr18 (31830207-31829507)

	cbe (0.478469)
	sug (0.381874)
	fco (0.314416)
	fce (0.271592)
	fcc (0.197785)
	ret (0.128733)
	pgl (0.118483)
	ebs (0.118301)