Non-Coding RNA Search

Ss1.1-rpfco0135_k21.5

Sequence:


               
               GTGTCAAGCTTTGGATTCGGATGCTATTGTGGTTGCAGTTTTCAATGGCTTACCTACTGT
TGAGAAAAGGAGAAAAATGGTCACCTTGTGGGACTAATGCTAAAGGAGGTCGTCTGGAAG
GAATGCAAATGACTGACTTGGAAAATAATTCTGAAACTGGGGAATTACAGCCTATACTAC
CCGAAGGAGCTTCATCTGCCCCAGAGGAAGGAATGAGTAGCGACAGTGATATTGAATGTG
ACACCGAGAATGAGGAGCAGGAAGAGCACACCAGCATGGGCGGATTTAGCGACTCTTTCA
TGGCACAGCCCCCAGATGAAGATACACATTCCAGTTTTCCTGATGGTGAACAAATAGGCC
CTGAAGATCTCAGCTTCAATGCTGATGAAACCAGTGTTAGATAATCTGATTTGAAACTCA
CACTACACCTGATGGGTTGTTAACAAGATCTAGGCTTCGGAACATGACAGATGTGAGTGA
GGTCCATGGAATGAGGGTAAAGCAGCAGGATGGTGAAGAGGTTCTGGTACTATAGTCGGA
GCCGTTTCCTCTTCCCTTTCAGCCATGTGTCCCAAGAAAAAAGAAGTGACTTCAGAATAA
GGGAAAACATACTAAAAAATCTCTACTTATATCCCAATTTTAAAAAATAAAATCTGTAGA
TTAACAATCTGTTGCTGAAGTGAAGCTGTTTTTATTTATTTGATATAGCTACACTGGCAG
ACAAAAATATGTTACAGTCCTGTTTTTAAGAGTCCAAGAATTTTAATCCTTCATTATGAG
TCTGGGAAACAAAGTAACTTGTATTAGTATTATGTAAAAACACGATAGGTCAGTGGACAT
TTCTCAGCAAGAGCATTTAGTGCCTCCTGGCAGGATGAGCATTGGCGTGGCTGCTCGGTG
GCTGACGGGGGAGGGCAAAATGTCATGTGGAGACAGTCCTGATTCTCAGAGAAATCAGGC
TGCTTCACTAAATGAATCTGTTTATTAGTTTATCTGCTGCCTTATTTGCAGATATGCTTC
TGACTTGAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTCAAGCTTTGGATTCGGATGCTATTGTGGTTGCAGTTTTCAATGGCTTACCTACTGT
TGAGAAAAGGAGAAAAATGGTCACCTTGTGGGACTAATGCTAAAGGAGGTCGTCTGGAAG
GAATGCAAATGACTGACTTGGAAAATAATTCTGAAACTGGGGAATTACAGCCTATACTAC
CCGAAGGAGCTTCATCTGCCCCAGAGGAAGGAATGAGTAGCGACAGTGATATTGAATGTG
ACACCGAGAATGAGGAGCAGGAAGAGCACACCAGCATGGGCGGATTTAGCGACTCTTTCA
TGGCACAGCCCCCAGATGAAGATACACATTCCAGTTTTCCTGATGGTGAACAAATAGGCC
CTGAAGATCTCAGCTTCAATGCTGATGAAACCAGTGTTAGATAATCTGATTTGAAACTCA
CACTACACCTGATGGGTTGTTAACAAGATCTAGGCTTCGGAACATGACAGATGTGAGTGA
GGTCCATGGAATGAGGGTAAAGCAGCAGGATGGTGAAGAGGTTCTGGTACTATAGTCGGA
GCCGTTTCCTCTTCCCTTTCAGCCATGTGTCCCAAGAAAAAAGAAGTGACTTCAGAATAA
GGGAAAACATACTAAAAAATCTCTACTTATATCCCAATTTTAAAAAATAAAATCTGTAGA
TTAACAATCTGTTGCTGAAGTGAAGCTGTTTTTATTTATTTGATATAGCTACACTGGCAG
ACAAAAATATGTTACAGTCCTGTTTTTAAGAGTCCAAGAATTTTAATCCTTCATTATGAG
TCTGGGAAACAAAGTAACTTGTATTAGTATTATGTAAAAACACGATAGGTCAGTGGACAT
TTCTCAGCAAGAGCATTTAGTGCCTCCTGGCAGGATGAGCATTGGCGTGGCTGCTCGGTG
GCTGACGGGGGAGGGCAAAATGTCATGTGGAGACAGTCCTGATTCTCAGAGAAATCAGGC
TGCTTCACTAAATGAATCTGTTTATTAGTTTATCTGCTGCCTTATTTGCAGATATGCTTC
TGACTTGAAACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               398-805, gnl|bosTau2|chr6 (52017508-52017920)
               

               
               398-805, gnl|Hg17|chr17 (54415067-54414644)
               

               
               398-805, gnl|Mm7|chr11 (87298951-87299363)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               398-805, gnl|bosTau2|chr6 (52017508-52017920)
               

               
               398-805, gnl|Hg17|chr17 (54415067-54414644)
               

               
               398-805, gnl|Mm7|chr11 (87298951-87299363)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               cte (0.58548)
               

               
               hlv (0.278513)
               

               
               sug (0.254582)
               

               
               mgm (0.180343)
               

               
               fco (0.157208)
               

               
               spl (0.143184)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               hlv (0.278513)
               

               
               sug (0.254582)
               

               
               mgm (0.180343)
               

               
               fco (0.157208)
               

               
               spl (0.143184)

	398-805, gnl\|bosTau2\|chr6 (52017508-52017920)
	398-805, gnl\|Hg17\|chr17 (54415067-54414644)
	398-805, gnl\|Mm7\|chr11 (87298951-87299363)

	cte (0.58548)
	hlv (0.278513)
	sug (0.254582)
	mgm (0.180343)
	fco (0.157208)
	spl (0.143184)