Non-Coding RNA Search

Ss1.1-rpfco0136_d23.5

Sequence:


               
               GGGTCAATGCTGTGGTGCAGGTTCAGTCCCTGTCCCAGGAATTTTCATATGCCATGGGCA
TAGCCAAAAAAGGAAGAAAGGTAGATGAGGCAAATCCTAGAAAATGCTAATCATGGTTAG
ACCCTCTCCCTTACTCCTTCCAGTTTTCCTAACAATCCTATCTCCTCTACTATTAATTCT
TCTTTTCAAAGAAACCAAATTTTAACTGCCTTTATTGGGTTTCCTGCACTTTTTCTTTCA
ATTTTTTAAATAATTTCCTGAAGAATTTGCATTTGGTAGTTTTGAATCCTTAATTTAGCA
TACCTACCAGCATCCCTCCGTATCCATTCTAAGTCTTTTGCACATTATGTCATTTAAAAT
TAGACCAGGCCACTGAGTGTAATTTTAATTTGTCCTAATTTTTAAAACTATTTTAGCCCC
AAAGTTTCTGTGGAATGCTTCTACCGTAAAGACAGATTTTTTTTGTATTGTATTTCAAAA
TGTTGGAGGTAGAGTATGGTATTTTTTGTATATAGTTTAACTTGTCAGTCCCTATTGAAA
TACTGTGTTTGTTTATGCAGAGATTCACTTGAGTTCATGTATGAATCTTTGACATTCCTG
ACCTGCCCACAGTCAGAACAGCTGAAGCTACACATGCTTGGGAACGTGAGATCATTATTT
CAATCCTAAAAATAACTTCTGCTGTTTGCAGGAATGCAGGACTGTTTTCAGAGTTAATCA
GGAAATGGTAAACAGTTTCATTTGCTTTGGGCTTCAAAAATCTGACTCTTGAGGATTCAT
TGAGTTTAAGAAAGATCTTGAAACACTGAGGGGAAAGTTGGGTGAAAAGAGTGGACAAAT
AGCCTATCAAGATGAATAATTGACAGTTACTCATAACATTTAACAAGACTGTCCTTGGAC
AAAACCATTACCTCATTGAATAAGCAATTACTAAATGCCTTCAGGGGCAGCAGACCATCA
CACGAAACAGGATGGGTGAGGTGAGCTAAATTCTTTAACCTCATGAGGTCAGCTTCACAG
AACAGGAGTAGAAGGGCCAGTAACAAGACTGCTCTTGCCCCTTTCAAGATTAGAATCTTA
GCACCTGCCTTAACTCTGCTTTTAACGTGTTCCTGAATTTCATTCAGTCAGTTAAGCAAA
GTGCTTTTTCCTGCCAAGATGCCAAAATTTTTTGTTGAATTTACATTTCAACTGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTCAATGCTGTGGTGCAGGTTCAGTCCCTGTCCCAGGAATTTTCATATGCCATGGGCA
TAGCCAAAAAAGGAAGAAAGGTAGATGAGGCAAATCCTAGAAAATGCTAATCATGGTTAG
ACCCTCTCCCTTACTCCTTCCAGTTTTCCTAACAATCCTATCTCCTCTACTATTAATTCT
TCTTTTCAAAGAAACCAAATTTTAACTGCCTTTATTGGGTTTCCTGCACTTTTTCTTTCA
ATTTTTTAAATAATTTCCTGAAGAATTTGCATTTGGTAGTTTTGAATCCTTAATTTAGCA
TACCTACCAGCATCCCTCCGTATCCATTCTAAGTCTTTTGCACATTATGTCATTTAAAAT
TAGACCAGGCCACTGAGTGTAATTTTAATTTGTCCTAATTTTTAAAACTATTTTAGCCCC
AAAGTTTCTGTGGAATGCTTCTACCGTAAAGACAGATTTTTTTTGTATTGTATTTCAAAA
TGTTGGAGGTAGAGTATGGTATTTTTTGTATATAGTTTAACTTGTCAGTCCCTATTGAAA
TACTGTGTTTGTTTATGCAGAGATTCACTTGAGTTCATGTATGAATCTTTGACATTCCTG
ACCTGCCCACAGTCAGAACAGCTGAAGCTACACATGCTTGGGAACGTGAGATCATTATTT
CAATCCTAAAAATAACTTCTGCTGTTTGCAGGAATGCAGGACTGTTTTCAGAGTTAATCA
GGAAATGGTAAACAGTTTCATTTGCTTTGGGCTTCAAAAATCTGACTCTTGAGGATTCAT
TGAGTTTAAGAAAGATCTTGAAACACTGAGGGGAAAGTTGGGTGAAAAGAGTGGACAAAT
AGCCTATCAAGATGAATAATTGACAGTTACTCATAACATTTAACAAGACTGTCCTTGGAC
AAAACCATTACCTCATTGAATAAGCAATTACTAAATGCCTTCAGGGGCAGCAGACCATCA
CACGAAACAGGATGGGTGAGGTGAGCTAAATTCTTTAACCTCATGAGGTCAGCTTCACAG
AACAGGAGTAGAAGGGCCAGTAACAAGACTGCTCTTGCCCCTTTCAAGATTAGAATCTTA
GCACCTGCCTTAACTCTGCTTTTAACGTGTTCCTGAATTTCATTCAGTCAGTTAAGCAAA
GTGCTTTTTCCTGCCAAGATGCCAAAATTTTTTGTTGAATTTACATTTCAACTGAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               583-742, - strand, RNAz p=0.819351

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               583-742, - strand, RNAz p=0.819351

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               74-1200, gnl|bosTau2|chr24 (26749154-26747955)
               

               
               74-1200, gnl|Hg17|chr18 (3246298-3247756)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-1200, gnl|bosTau2|chr24 (26749154-26747955)
               

               
               74-1200, gnl|Hg17|chr18 (3246298-3247756)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               pro (0.512033)
               

               
               sme (0.305437)
               

               
               cbl (0.229595)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               sme (0.305437)
               

               
               cbl (0.229595)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

	74-1200, gnl\|bosTau2\|chr24 (26749154-26747955)
	74-1200, gnl\|Hg17\|chr18 (3246298-3247756)

	pro (0.512033)
	sme (0.305437)
	cbl (0.229595)
	fco (0.157208)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	ova (0.129132)
	clu (0.119646)
	ldo (0.0970026)