Non-Coding RNA Search

Ss1.1-rpfco0136_h18.5

Sequence:


               
               ATGATGAAAAACACTTAGCTTGTTCACCAAGAATAATGATGGATTCTATTTAGCTTTTCT
CATATGTAAGATAAGAGTTGCGATGGATTTTATTTCAACAGAACAATATATATTTATCAA
AGAGGAATTAGCAGTGGGGAATTGTTTTTTTTTTAAAAAAGTAGCAAATAGCGTCGTGAA
GGATTCAGCCAAAAGGTTAGTTTATAAACAGCAAAACACATCAACTAAGAGTTTTAACTC
AGAGTTTCAAAAAAGGCTTTATTTACATGAAACATCAGGGCTGGGTACCTTTTAAAGAGT
CGGCTCTCGAATCAGACTGTCATTGCTAATAGATCTGACCTTTTCTTCAGATAAATAAGC
ATTGTTTTCTCTGTTTGAGTCCAAGGAAAGACAGATAAAAGGTAAAGAGACTATATATAA
GGCAAACAGTTCTCTTTTTTTTTTGCATTATATATTATTAATTAATGAAATTGTGGCCTT
TGTTATTATAAATGTAATGATTCATTAAACTATATTATGTAATATATTTTGACTTTTATG
ATTGAATTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGATGAAAAACACTTAGCTTGTTCACCAAGAATAATGATGGATTCTATTTAGCTTTTCT
CATATGTAAGATAAGAGTTGCGATGGATTTTATTTCAACAGAACAATATATATTTATCAA
AGAGGAATTAGCAGTGGGGAATTGTTTTTTTTTTAAAAAAGTAGCAAATAGCGTCGTGAA
GGATTCAGCCAAAAGGTTAGTTTATAAACAGCAAAACACATCAACTAAGAGTTTTAACTC
AGAGTTTCAAAAAAGGCTTTATTTACATGAAACATCAGGGCTGGGTACCTTTTAAAGAGT
CGGCTCTCGAATCAGACTGTCATTGCTAATAGATCTGACCTTTTCTTCAGATAAATAAGC
ATTGTTTTCTCTGTTTGAGTCCAAGGAAAGACAGATAAAAGGTAAAGAGACTATATATAA
GGCAAACAGTTCTCTTTTTTTTTTGCATTATATATTATTAATTAATGAAATTGTGGCCTT
TGTTATTATAAATGTAATGATTCATTAAACTATATTATGTAATATATTTTGACTTTTATG
ATTGAATTTTTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-552, gnl|bosTau2|chr13 (20152560-20153113)
               

               
               1-552, gnl|Hg17|chr10 (16594515-16593958)
               

               
               1-552, gnl|Mm7|chr2 (12941462-12940911)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr13 (20152560-20153113)
               

               
               1-552, gnl|Hg17|chr10 (16594515-16593958)
               

               
               1-552, gnl|Mm7|chr2 (12941462-12940911)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               fco (0.314416)
               

               
               kid (0.259471)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               hyp (0.142837)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               kid (0.259471)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               hyp (0.142837)

	1-552, gnl\|bosTau2\|chr13 (20152560-20153113)
	1-552, gnl\|Hg17\|chr10 (16594515-16593958)
	1-552, gnl\|Mm7\|chr2 (12941462-12940911)

	fco (0.314416)
	kid (0.259471)
	fcc (0.197785)
	gul (0.177588)
	hyp (0.142837)