Non-Coding RNA Search

Ss1.1-rpfco0136_m24.5

Sequence:


               
               TGATTTGGCTTCTTAGCTGATTGGGGGCAGTCATTTTGGTACCTGAGGGTTGGACGGAAC
TCAAAGGAAGTTGCTGTGAAGATGGTTTGGGTTATTTGGGAGTTGTGTTGGCTTTTTAAT
GTTTTTCCTTTCTTGAATGTGTAAATATCATATCAATAATGAGGTAAGTGTGCGCTGCTA
AGCTGTTTGCTCACGTGACTGCCAGCCCCACCGGAGTCTAAGCTGGGTTTCCTTTCTATC
AGTTTCTTTTTGCCAGTTTAACACAAATGACAAACTCCTCCGTGTGCATCCTGCCCCCGT
GCAAACCGCCTGGGCGCTACCAGTGTTGCGATATGGGCTTCACAGCATCTGCCACGTAAC
ATTCCTCCTCTGATCACTGCCCCTTGCAGAGAGTGTATCATCTGTTTTATTTTTGTAAAA
AGAAAAAAAAAGTGCTAAATAATATTTATTACTTGTTTGGTTGCAAAAATGAAATAAATG
ATCGAGTGGTGAGATTTTAAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATTTGGCTTCTTAGCTGATTGGGGGCAGTCATTTTGGTACCTGAGGGTTGGACGGAAC
TCAAAGGAAGTTGCTGTGAAGATGGTTTGGGTTATTTGGGAGTTGTGTTGGCTTTTTAAT
GTTTTTCCTTTCTTGAATGTGTAAATATCATATCAATAATGAGGTAAGTGTGCGCTGCTA
AGCTGTTTGCTCACGTGACTGCCAGCCCCACCGGAGTCTAAGCTGGGTTTCCTTTCTATC
AGTTTCTTTTTGCCAGTTTAACACAAATGACAAACTCCTCCGTGTGCATCCTGCCCCCGT
GCAAACCGCCTGGGCGCTACCAGTGTTGCGATATGGGCTTCACAGCATCTGCCACGTAAC
ATTCCTCCTCTGATCACTGCCCCTTGCAGAGAGTGTATCATCTGTTTTATTTTTGTAAAA
AGAAAAAAAAAGTGCTAAATAATATTTATTACTTGTTTGGTTGCAAAAATGAAATAAATG
ATCGAGTGGTGAGATTTTAAATAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               369-482, - strand, RNAz p=0.689609

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               369-482, - strand, RNAz p=0.689609

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               433-518, + strand, RNAmicro p=0.997745

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               433-518, + strand, RNAmicro p=0.997745

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-504, gnl|bosTau2|chr1 (700950-701463)
               

               
               1-504, gnl|canFam2|chr31 (30693443-30694478)
               

               
               1-504, gnl|dasNov1|scaffold_88304 (5802-6780)
               

               
               1-504, gnl|hg17|chr21 (33322233-33323249)
               

               
               1-504, gnl|Hg17|chr21 (33322887-33323361)
               

               
               1-504, gnl|loxAfr1|scaffold_32930 (18677-17655)
               

               
               1-504, gnl|mm7|chr16 (91277480-91278448)
               

               
               1-504, gnl|Mm7|chr16 (91278068-91278566)
               

               
               1-504, gnl|monDom2|scaffold_29 (14932046-14930997)
               

               
               1-504, gnl|oryCun1|scaffold_169677 (10126-11025)
               

               
               1-504, gnl|panTro1|chr22 (33288105-33289119)
               

               
               1-504, gnl|rheMac2|chr3 (13528211-13527198)
               

               
               1-504, gnl|rn3|chr11 (31245478-31246514)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-504, gnl|bosTau2|chr1 (700950-701463)
               

               
               1-504, gnl|canFam2|chr31 (30693443-30694478)
               

               
               1-504, gnl|dasNov1|scaffold_88304 (5802-6780)
               

               
               1-504, gnl|hg17|chr21 (33322233-33323249)
               

               
               1-504, gnl|Hg17|chr21 (33322887-33323361)
               

               
               1-504, gnl|loxAfr1|scaffold_32930 (18677-17655)
               

               
               1-504, gnl|mm7|chr16 (91277480-91278448)
               

               
               1-504, gnl|Mm7|chr16 (91278068-91278566)
               

               
               1-504, gnl|monDom2|scaffold_29 (14932046-14930997)
               

               
               1-504, gnl|oryCun1|scaffold_169677 (10126-11025)
               

               
               1-504, gnl|panTro1|chr22 (33288105-33289119)
               

               
               1-504, gnl|rheMac2|chr3 (13528211-13527198)
               

               
               1-504, gnl|rn3|chr11 (31245478-31246514)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               eye (0.170503)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               eye (0.170503)
               

               
               spc (0.113366)

	1-504, gnl\|bosTau2\|chr1 (700950-701463)
	1-504, gnl\|canFam2\|chr31 (30693443-30694478)
	1-504, gnl\|dasNov1\|scaffold_88304 (5802-6780)
	1-504, gnl\|hg17\|chr21 (33322233-33323249)
	1-504, gnl\|Hg17\|chr21 (33322887-33323361)
	1-504, gnl\|loxAfr1\|scaffold_32930 (18677-17655)
	1-504, gnl\|mm7\|chr16 (91277480-91278448)
	1-504, gnl\|Mm7\|chr16 (91278068-91278566)
	1-504, gnl\|monDom2\|scaffold_29 (14932046-14930997)
	1-504, gnl\|oryCun1\|scaffold_169677 (10126-11025)
	1-504, gnl\|panTro1\|chr22 (33288105-33289119)
	1-504, gnl\|rheMac2\|chr3 (13528211-13527198)
	1-504, gnl\|rn3\|chr11 (31245478-31246514)