Non-Coding RNA Search

Ss1.1-rpfco0136_p8.5

Sequence:


               
               AAAATCCTCAGCCCCCTCCATTGGTCCCAGTCCAGCTCTTATCAACTCCCCATAGGAAAA
CCCATTTGTTCTTGGCTCTGTGATCAGGAAGGGGCCTGCCTAAAAACTATTTTATTATTT
CAAACAGCAGTGGAACCAGAAGAGCTAGGCTCTAGGACCCTTTGTGACTCCCAGGAGAGA
CCATTGAAAAGGTTGGAGCAACAAAGCTCCTGCTTCCATTCCTCCCTGCCCACCTCCACC
AAGTCATCTGAGGTTCTGCAAGACCTTCTTTGTTGCTTATGGCATGGATAGCTCTTAAGA
ATCAGGCTGCCACCCACTTCTCTCCAGATGAAGGGAGGACATTGACAGGTTCCAAATCTG
CCCTATCAGGTGTCACATAACATGGCGAGGTATCAGTTTACTTCTTCCACACGTGTATGT
CCATGTGTATGCTTGTGCGCTTTTGGAGAGAATGTTCGTTGGCAAAAGTAGTATTAATAT
TTAGGGTAAGATGCAGCCTCTTATGTACCACAGTTAAATCTACGAACGAACAAAACTTGT
GAGCTTGAGATCTGGGACATTTAAATCCTCAAAAGGTTTGGAACAAAATAAACAAATCTA
AAATCTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATCCTCAGCCCCCTCCATTGGTCCCAGTCCAGCTCTTATCAACTCCCCATAGGAAAA
CCCATTTGTTCTTGGCTCTGTGATCAGGAAGGGGCCTGCCTAAAAACTATTTTATTATTT
CAAACAGCAGTGGAACCAGAAGAGCTAGGCTCTAGGACCCTTTGTGACTCCCAGGAGAGA
CCATTGAAAAGGTTGGAGCAACAAAGCTCCTGCTTCCATTCCTCCCTGCCCACCTCCACC
AAGTCATCTGAGGTTCTGCAAGACCTTCTTTGTTGCTTATGGCATGGATAGCTCTTAAGA
ATCAGGCTGCCACCCACTTCTCTCCAGATGAAGGGAGGACATTGACAGGTTCCAAATCTG
CCCTATCAGGTGTCACATAACATGGCGAGGTATCAGTTTACTTCTTCCACACGTGTATGT
CCATGTGTATGCTTGTGCGCTTTTGGAGAGAATGTTCGTTGGCAAAAGTAGTATTAATAT
TTAGGGTAAGATGCAGCCTCTTATGTACCACAGTTAAATCTACGAACGAACAAAACTTGT
GAGCTTGAGATCTGGGACATTTAAATCCTCAAAAGGTTTGGAACAAAATAAACAAATCTA
AAATCTAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-292, - strand, RNAz p=0.999927

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-292, - strand, RNAz p=0.999927

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-603, gnl|bosTau2|chrX (21744272-21743658)
               

               
               1-603, gnl|Hg17|chrX (73536148-73536768)
               

               
               1-603, gnl|Mm7|chrX (99025408-99024776)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-603, gnl|bosTau2|chrX (21744272-21743658)
               

               
               1-603, gnl|Hg17|chrX (73536148-73536768)
               

               
               1-603, gnl|Mm7|chrX (99025408-99024776)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cki (0.330469)
               

               
               fco (0.314416)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               csk (0.140746)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               fco (0.314416)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               csk (0.140746)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	1-603, gnl\|bosTau2\|chrX (21744272-21743658)
	1-603, gnl\|Hg17\|chrX (73536148-73536768)
	1-603, gnl\|Mm7\|chrX (99025408-99024776)

	cki (0.330469)
	fco (0.314416)
	fcc (0.197785)
	cmu (0.186393)
	csk (0.140746)
	cly (0.120642)
	ecc (0.115035)
	spc (0.113366)