Non-Coding RNA Search

Ss1.1-rpfco0138_m19.5

Sequence:


               
               GATAGACTCTTCCAGGTAGTAATCAGAAGTTGGAGGTATTAGACACCAGCACCCCCCACC
CCCATCCTCCAAAAGACCTCCCTCTGAGAACCACAGCTGGGTCTAGCCTTCTGGGGGCTG
GGGCACTCCCGGGCTTAAGTGGTGGGCTAGGCAGAAGGGTAAGGGGGCTGGATCAACATC
AATTAGGGAACCAAAGTTGCACTATTTGGGCCCAGACTGTCTGGTTGGCAAGAGCAAAGT
TTCCGTTGATGAAAACAGACATCCCACAACAAAACCCCCAAGTTTTCTGTGCTACATGTG
CAATATTTGTTATGAATGTTATCACACGTCATTCATCAAATTATCTTTATAACCATGCAG
CTAGATGTTTCATGTCCATTCAAGTGACTTTTATTCTGAGTGCAATATTTCAATAGCCTT
GTAGTGATAACTAGTGTTGCTTTTGTTTTAGACGATCTATGTGCAGGGCAATGCAATGAA
GTTGAAAACCCTTGTAAATAGGCGATTGCAAACCAAATCAAGAGTATTTATTACTATTAC
TAGGCCTGCCTTTAATTTTCAGTGTGTTTCAGTATTCCGCATTCTGCCTCAGTATTATCT
TGTGTTCTTTGTGCCAATATGAAAAGGAGAGGGTTGGTTCTTTCCTTTTTGTTGAATGCT
CCCATTTACTGCTTTATAGCTTTTACTGTATTAATTTTTTAGACTCCTGTCTGCACAAAA
TGCAATAAAAACAATTTTATTATAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATAGACTCTTCCAGGTAGTAATCAGAAGTTGGAGGTATTAGACACCAGCACCCCCCACC
CCCATCCTCCAAAAGACCTCCCTCTGAGAACCACAGCTGGGTCTAGCCTTCTGGGGGCTG
GGGCACTCCCGGGCTTAAGTGGTGGGCTAGGCAGAAGGGTAAGGGGGCTGGATCAACATC
AATTAGGGAACCAAAGTTGCACTATTTGGGCCCAGACTGTCTGGTTGGCAAGAGCAAAGT
TTCCGTTGATGAAAACAGACATCCCACAACAAAACCCCCAAGTTTTCTGTGCTACATGTG
CAATATTTGTTATGAATGTTATCACACGTCATTCATCAAATTATCTTTATAACCATGCAG
CTAGATGTTTCATGTCCATTCAAGTGACTTTTATTCTGAGTGCAATATTTCAATAGCCTT
GTAGTGATAACTAGTGTTGCTTTTGTTTTAGACGATCTATGTGCAGGGCAATGCAATGAA
GTTGAAAACCCTTGTAAATAGGCGATTGCAAACCAAATCAAGAGTATTTATTACTATTAC
TAGGCCTGCCTTTAATTTTCAGTGTGTTTCAGTATTCCGCATTCTGCCTCAGTATTATCT
TGTGTTCTTTGTGCCAATATGAAAAGGAGAGGGTTGGTTCTTTCCTTTTTGTTGAATGCT
CCCATTTACTGCTTTATAGCTTTTACTGTATTAATTTTTTAGACTCCTGTCTGCACAAAA
TGCAATAAAAACAATTTTATTATAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               619-737, + strand, RNAz p=0.853089

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               619-737, + strand, RNAz p=0.853089

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_020708, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_020708, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-744, gnl|bosTau2|chr13 (54828744-54829485)
               

               
               1-744, gnl|Hg17|chr20 (44121440-44122191)
               

               
               1-744, gnl|Mm7|chr2 (164739674-164740376)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr13 (54828744-54829485)
               

               
               1-744, gnl|Hg17|chr20 (44121440-44122191)
               

               
               1-744, gnl|Mm7|chr2 (164739674-164740376)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fhi (0.508733)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.508733)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               ecc (0.115035)

	1-744, gnl\|bosTau2\|chr13 (54828744-54829485)
	1-744, gnl\|Hg17\|chr20 (44121440-44122191)
	1-744, gnl\|Mm7\|chr2 (164739674-164740376)

	fhi (0.508733)
	ebs (0.236602)
	ece (0.229305)
	fcc (0.197785)
	fbs (0.175346)
	fco (0.157208)
	fat (0.147427)
	ecc (0.115035)