Non-Coding RNA Search

Ss1.1-rpfco0139_j7.5

Sequence:


               
               TAGAAGACATCTTGCAGACAGTGTGGTCCCCATTACAATGTTTATTACACATGTTCGTGT
TACAGCCTGTAAGTAACGAGAGAAATGTTTTCCTAATCAGTTCTTAAAATTTTTCGTACT
CCTTTGCCTATAGCGAGTTAACTTTTCATCATCAGTTATCTTTGGATGGAGCTAATATAA
AGACAGGTTCTTTGTCTTTTCAAGGGAGAATTTATCCTGCTCAGGGTTAAGGTGAACACG
TTAGATGTCTTTGGATAGTATTTTTTATGTAAATAGTGCTTTTTATCAGTTCTTTGAGAA
GCAGAGATGTTTGACTTCAGTCAGAGAAAGCTACCAGATGATTTAAGTTAATTTCAAAGA
GGAAAAGTATTTCAAGTAGTTTAACATCGACAGAGGAATAAAAGATTATATATACCAAGA
GTGCAAAATGATTGAAGAAGGATCACATTCACAAATGCTGTATGTTTAACGAAATACGTG
TAGATGGTAATATCCAATAGTCTTATCAAGTGCTACAATCTTTTTAAACAGGGAATGGCC
AAATCCAGTCCTATTGAAACAGCCTGAAGAATGCAATCTTAATTTGCCTGTATGGGACCC
AAGGGTTAGTGTATTATTTTTTCCCCTACAAATTCAAACTGTTCAATAACAAGTAAAAAT
CCTCTGCATAGACTTCAGGGAGACTTCCCATCCTATTAACGTATGAGTGGACATGTTCGT
ATTACACTTTTTTTTAATCTCAACTATAATTGTCCTCTGATGTGAGAAGCGTAATTATGT
ACCCTGTAAAACTACATTTAATTGTACATAGTTTATAATACCAAAGTCACTAACATTTTA
ATTTATTCTATAGAGAACTGCCTTGTAAGTCAAAGTTGTGTGGGCATTTGTGCTTAAAAA
ATAATAATAAAAGGATACTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAAGACATCTTGCAGACAGTGTGGTCCCCATTACAATGTTTATTACACATGTTCGTGT
TACAGCCTGTAAGTAACGAGAGAAATGTTTTCCTAATCAGTTCTTAAAATTTTTCGTACT
CCTTTGCCTATAGCGAGTTAACTTTTCATCATCAGTTATCTTTGGATGGAGCTAATATAA
AGACAGGTTCTTTGTCTTTTCAAGGGAGAATTTATCCTGCTCAGGGTTAAGGTGAACACG
TTAGATGTCTTTGGATAGTATTTTTTATGTAAATAGTGCTTTTTATCAGTTCTTTGAGAA
GCAGAGATGTTTGACTTCAGTCAGAGAAAGCTACCAGATGATTTAAGTTAATTTCAAAGA
GGAAAAGTATTTCAAGTAGTTTAACATCGACAGAGGAATAAAAGATTATATATACCAAGA
GTGCAAAATGATTGAAGAAGGATCACATTCACAAATGCTGTATGTTTAACGAAATACGTG
TAGATGGTAATATCCAATAGTCTTATCAAGTGCTACAATCTTTTTAAACAGGGAATGGCC
AAATCCAGTCCTATTGAAACAGCCTGAAGAATGCAATCTTAATTTGCCTGTATGGGACCC
AAGGGTTAGTGTATTATTTTTTCCCCTACAAATTCAAACTGTTCAATAACAAGTAAAAAT
CCTCTGCATAGACTTCAGGGAGACTTCCCATCCTATTAACGTATGAGTGGACATGTTCGT
ATTACACTTTTTTTTAATCTCAACTATAATTGTCCTCTGATGTGAGAAGCGTAATTATGT
ACCCTGTAAAACTACATTTAATTGTACATAGTTTATAATACCAAAGTCACTAACATTTTA
ATTTATTCTATAGAGAACTGCCTTGTAAGTCAAAGTTGTGTGGGCATTTGTGCTTAAAAA
ATAATAATAAAAGGATACTAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               521-924, gnl|bosTau2|chr5 (41430171-41430564)
               

               
               521-924, gnl|Hg17|chr14 (96068730-96070980)
               

               
               521-924, gnl|Mm7|chr12 (103307452-103309211)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               521-924, gnl|bosTau2|chr5 (41430171-41430564)
               

               
               521-924, gnl|Hg17|chr14 (96068730-96070980)
               

               
               521-924, gnl|Mm7|chr12 (103307452-103309211)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               hea (0.204499)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               eje (0.0988338)

	521-924, gnl\|bosTau2\|chr5 (41430171-41430564)
	521-924, gnl\|Hg17\|chr14 (96068730-96070980)
	521-924, gnl\|Mm7\|chr12 (103307452-103309211)

	hea (0.204499)
	eye (0.170503)
	fco (0.157208)
	bfe (0.149858)
	liv (0.146284)
	spl (0.143184)
	ret (0.128733)
	eje (0.0988338)