Non-Coding RNA Search

Ss1.1-rpfco0139_k10.5

Sequence:


               
               TACTAATATGGAGGAAATGAATATGAATCTTAAAAGAGAAGCGGAAAATTTGTGTAGCCA
AAGAGGGTTGGTACCCAATACAGATGGTCAGACTTTTCAGATTGCAATTTCTAGCCAGAT
GAGACAACACTATGACAGAATTCATGAAACACTAACAAGGAGAAATGGCCCTGCTAGACT
GTTGAGTTCATCAGCAAGTACTTTTGAGCAGAGTATAAAAGCATATCATACTATGAATAA
ATTTCTTGGCTCTTTCATCGATCATGTTCATAAGGAAATGGACTACTTTATAAAAGATAA
ATTGCTTCTTGAAAGAATTCTTGGAATGGAATTCATGGAACCAATGGAAAAAAGTATCTT
TTACAACGATGAAGGCTATTCTTTCAGCAGTGTTCTGTATTATGGAAATGAAGCCACCCT
TCTTATTTATGATCTGCTCTTCTTCTGTGTTGTGGATTTGGCTTGCCAAAATTTTATTTT
AGCAGCCTTCCTTACATACCTACAACAAGAGATTTTTAGATTTATTCGTAATACAGTAGG
ACAGAAGAATTTGGCATCCAAAACATTGGTGGATCAAAGATTTCTGATTTAGTTTACTGC
CTAAAGACTAATTTATAATCATGGCAAAAAAAGTCATGATTATCAGGTTAGTTTGCCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTAATATGGAGGAAATGAATATGAATCTTAAAAGAGAAGCGGAAAATTTGTGTAGCCA
AAGAGGGTTGGTACCCAATACAGATGGTCAGACTTTTCAGATTGCAATTTCTAGCCAGAT
GAGACAACACTATGACAGAATTCATGAAACACTAACAAGGAGAAATGGCCCTGCTAGACT
GTTGAGTTCATCAGCAAGTACTTTTGAGCAGAGTATAAAAGCATATCATACTATGAATAA
ATTTCTTGGCTCTTTCATCGATCATGTTCATAAGGAAATGGACTACTTTATAAAAGATAA
ATTGCTTCTTGAAAGAATTCTTGGAATGGAATTCATGGAACCAATGGAAAAAAGTATCTT
TTACAACGATGAAGGCTATTCTTTCAGCAGTGTTCTGTATTATGGAAATGAAGCCACCCT
TCTTATTTATGATCTGCTCTTCTTCTGTGTTGTGGATTTGGCTTGCCAAAATTTTATTTT
AGCAGCCTTCCTTACATACCTACAACAAGAGATTTTTAGATTTATTCGTAATACAGTAGG
ACAGAAGAATTTGGCATCCAAAACATTGGTGGATCAAAGATTTCTGATTTAGTTTACTGC
CTAAAGACTAATTTATAATCATGGCAAAAAAAGTCATGATTATCAGGTTAGTTTGCCATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               414-529, - strand, RNAz p=0.826745

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               414-529, - strand, RNAz p=0.826745

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               359-529, gnl|bosTau2|chr14 (43746566-43746738)
               

               
               359-529, gnl|Hg17|chr8 (94896700-94896872)
               

               
               359-529, gnl|Mm7|chr4 (11967933-11967761)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               359-529, gnl|bosTau2|chr14 (43746566-43746738)
               

               
               359-529, gnl|Hg17|chr8 (94896700-94896872)
               

               
               359-529, gnl|Mm7|chr4 (11967933-11967761)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fco (0.314416)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               tra (0.123092)

	359-529, gnl\|bosTau2\|chr14 (43746566-43746738)
	359-529, gnl\|Hg17\|chr8 (94896700-94896872)
	359-529, gnl\|Mm7\|chr4 (11967933-11967761)