Non-Coding RNA Search

Ss1.1-rpfco0139_k22.5

Sequence:


               
               AGAATCTCAGGAAGAAAAGAATTCCTCCTAAGGAGAAAAGGCATTTTTTTAAAGGACTAT
AACTGATAAAAGTATTTAATTCTTTTAAAAGTTATATTGATCTGAGCTTTCTTAGAGACT
TCCCTAGAGCTGAAAACTTATAAACATGGAATTCTTCAGGGTATTCTGAATTTTTTGACT
GTCTGAGAGCAAAGTACCCATTAGACAGCTGGAGATGCAAAGCACAGTGGAGCAATACTG
GCTAATGCTCCCAAATGTGCAATGCTTCTGTCTAAAAACTGCAAAGCACAGTCTAAATCG
TGTATGACCTTCCCAAGACGAAGCTGTATTCCGGTCCCCAGGGGCACATCCATCTCGGCC
GGTGGTACACTACCTCTTACGTACTGCTTTTTGTGTTGCTTGGTGCTCTTTCTAAAACAA
GGTGCTTATGGCTTACATAGACTCTTTTCTTTTTCCTCTTTGTCTGTCTTTAAGACTGTA
TGTACTGGTTACATCAAGATATATTTTGGCTGTTAGTACTTTTTTTCTGGTCAAATACTT
AATACCAAGTAAAACATTATTTATGTGAAATCCTTGTTCTACTTTAAAATTCTCTCTGTG
GATACAGGACCAAAGTCAGCACAGTGTAACCTGCGCTTAAGCACAAGAGATTGGGAGGGG
TTTTTGTTTTTTAAATTGCTGTAAAAAATATTATATAGGCCAGCTACATCCAGTAGTAGG
TTTGGGTTAGTTTAGGGGTTGTGATATACTATTTTTAAAAACCCAAGATCATCTGGAATG
ATACTCTGTATATATATATTTGGTAAAGTTCTAATTCAGCAAATCTTTTGAAATTGCTGC
TGTTTTAAATTATAAAAACATTACATTTCTGCTTCATATAAATTACATGTTTTGTAGTTA
TACATTTGCTTTTACTGTTCTTAATTTTAATGTGCTGGGACCTAAAATAATTTACCAGTC
TTTAAAGCCACCCTCAGGGGAACAAAAACAACCTTTTGCCATTTAAAATAGGACCAGTAA
CTTCTGACTTCACAGCTGTCAGAGAAATGTTACTTAAGTGCTAACAGAAAAATATTATAC
CTTATGGTATACAGAACAGCTTGTACATCTATTATAAACATACCAGTAGCCACAGCGAAC
CACACTTACCTATCTATAATAAAAAATTATTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATCTCAGGAAGAAAAGAATTCCTCCTAAGGAGAAAAGGCATTTTTTTAAAGGACTAT
AACTGATAAAAGTATTTAATTCTTTTAAAAGTTATATTGATCTGAGCTTTCTTAGAGACT
TCCCTAGAGCTGAAAACTTATAAACATGGAATTCTTCAGGGTATTCTGAATTTTTTGACT
GTCTGAGAGCAAAGTACCCATTAGACAGCTGGAGATGCAAAGCACAGTGGAGCAATACTG
GCTAATGCTCCCAAATGTGCAATGCTTCTGTCTAAAAACTGCAAAGCACAGTCTAAATCG
TGTATGACCTTCCCAAGACGAAGCTGTATTCCGGTCCCCAGGGGCACATCCATCTCGGCC
GGTGGTACACTACCTCTTACGTACTGCTTTTTGTGTTGCTTGGTGCTCTTTCTAAAACAA
GGTGCTTATGGCTTACATAGACTCTTTTCTTTTTCCTCTTTGTCTGTCTTTAAGACTGTA
TGTACTGGTTACATCAAGATATATTTTGGCTGTTAGTACTTTTTTTCTGGTCAAATACTT
AATACCAAGTAAAACATTATTTATGTGAAATCCTTGTTCTACTTTAAAATTCTCTCTGTG
GATACAGGACCAAAGTCAGCACAGTGTAACCTGCGCTTAAGCACAAGAGATTGGGAGGGG
TTTTTGTTTTTTAAATTGCTGTAAAAAATATTATATAGGCCAGCTACATCCAGTAGTAGG
TTTGGGTTAGTTTAGGGGTTGTGATATACTATTTTTAAAAACCCAAGATCATCTGGAATG
ATACTCTGTATATATATATTTGGTAAAGTTCTAATTCAGCAAATCTTTTGAAATTGCTGC
TGTTTTAAATTATAAAAACATTACATTTCTGCTTCATATAAATTACATGTTTTGTAGTTA
TACATTTGCTTTTACTGTTCTTAATTTTAATGTGCTGGGACCTAAAATAATTTACCAGTC
TTTAAAGCCACCCTCAGGGGAACAAAAACAACCTTTTGCCATTTAAAATAGGACCAGTAA
CTTCTGACTTCACAGCTGTCAGAGAAATGTTACTTAAGTGCTAACAGAAAAATATTATAC
CTTATGGTATACAGAACAGCTTGTACATCTATTATAAACATACCAGTAGCCACAGCGAAC
CACACTTACCTATCTATAATAAAAAATTATTTAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-114, - strand, RNAz p=0.848419
               

               
               155-314, - strand, RNAz p=0.99715

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-114, - strand, RNAz p=0.848419
               

               
               155-314, - strand, RNAz p=0.99715

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1165, gnl|bosTau2|chr5 (41559349-41558190)
               

               
               1-1165, gnl|Hg17|chr1 (85908129-85906951)
               

               
               1-1165, gnl|Mm7|chr3 (145447995-145449156)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1165, gnl|bosTau2|chr5 (41559349-41558190)
               

               
               1-1165, gnl|Hg17|chr1 (85908129-85906951)
               

               
               1-1165, gnl|Mm7|chr3 (145447995-145449156)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               aor (0.195274)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               nca (0.136874)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               nca (0.136874)

	1-114, - strand, RNAz p=0.848419
	155-314, - strand, RNAz p=0.99715

	1-1165, gnl\|bosTau2\|chr5 (41559349-41558190)
	1-1165, gnl\|Hg17\|chr1 (85908129-85906951)
	1-1165, gnl\|Mm7\|chr3 (145447995-145449156)