Ss1.1-rpfco0139_k24.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTTCTCTATAGGAATGGACAAGTCTGCTTTTCTACCCAGGATCACAAACCTTGCAACCC AAGGGAGAAGGAGCGAATCCAAAATGCAGGAGGCAGTGTAATGATACAGCGTGTTAATGG TTCATTAGCGGTGTCTCGTGCTCTGGGGGACTATGATTACAAGTGTGTTGATGGCAAGGG CCCAACAGAACAACTTGTTTCTCCAGAGCCTGAGGTTTATGAAATTTTAAGAGCAGAAGA GGATGAATTTATCATCTTGGCTTGTGATGGGATCTGGGATGTTATGAGTAATGAGGAGCT CTGTGAATTTGTGGACACTTGTTTACATAAGGGAAGTCGAGATAACATGAGTATTGTACT AGTTTGCTTTTCAAATGCCCCCAAGGTCTCAGATGAAGCAATGAGAAAAGACTCAGAATT GGATAAGTACTTGGAATCACGGGTGGAAGAAATTATGGAGAAGTCTGGTGAGGAAGGAAT GCCTGATCTTGCCCATGTCATGCGCATCTTGTCTGCCGAAAATATCCCAAATTTGCCTCC TGGGGGAGGTCTTGCTGGCAAGCGCAATGTTATTGAAGCTGTTTATAGTAGGCTGAATCC ACATAGAGAAAGTGATGGGGGTGCCGATGAAGCAGAGGAAGGTGGATCGCCTTATAAACC TTCTAAATGCTTCAGGCAAATGAGAATTAATCATAGGGGAAACTACCGACAACTTCTGGA GGAGATGCTGACTAGTTACAGGCTAGCTAAAGTAGAGGGAGAAGAAAGCCCTGCTGACCC AGCTGCTACAGCTACTTCTTCGAACAGTGATGCTGGAAACCCAGTGACAATGCAGGAAAG CCATACTGAATCAAAAAATGATCTTGCTGAATTAGACAGCTGTACTGAAGATGCAGGGAC AAAGATGGGTGGTGGAAAAATATGACTTGACTTTGTGGTAATATTTTTGTGATCTTTGAT TTGATGGTTTTTACTTAGGAAGTATAATGTATGCATTTATATAACCATTTTGTTATTTGA ATCTCGGTAAACTAGTTTTATTATCTTCATATAGCCTTGTTTTTTAAGAAGGCCTTTGCA TACATCTTTATCACATAGTTTGAAATTGGCTATTTATAGTACTTTGAATTTGATAAAATT ATATCTCACTTCATATTGTATGCCAGAAATGAGGCTACCGGTTATTAAAGTGAGTAGTTA AATTCATCCTAGATAGTAGGATTAGAGATTGCCAATTAGCAAGATGACCTTATATTGTGG AAAAGACTTGTTAATGTAGAATTATGCTGCTTTATATTACATTTTAGTACACTCATAGTT AGCTTTGTAATAAATTTGTGTTTTCTTTAGTAATTTTAGTTCTTCAAAGAATGGCAGATG CTGGGCTGTAATTTCTTTTTTCAAGGATGATAATTTGTGTGTTCTTTGACTTGTTTATAT TTTACATCTGTAGTTTTATTTTTAGCAGATCTGAGATACTGGATGTGTGGTTATTTTTCC TTTCTCTGTATTACAACAAGTTTTGTGTAATTTGGTATAATTTTTAATTGTTACGTTATT TTAAAAGCTCAGAATATCACATTGAAATGACTATAAGTACATTTAAAATTATCTATTTTA GATCTAAGGAAATATTACAGAGATATTTTCATGGGTTCAGTAACCTTTCATTTTATAACA TTGGGCACGGTACGGAGTGGCTGTCACATAAGGTACTTGAAGATTATTAGTTTAATTCTA TTTTTACAATAACCTTGAATCCTTGAATTCTTTTGAGTTTTGCATGTATCCAATTAATGC TGAACATGGAGAGTGAAATATTTATCTAAAAGAAGCTATTGGGGTAGGAGAAGCAATGAA TGTATCCATTTGTACATGGTTTACATGTTGTGGATGCTTTGTAAACATTTTCCTATCTGT TTAAATTGTGTTTCAGCAGGATGTAATTGCCCTTGTGTGTAGTTAAAATGAGTCATCATC TGGTCCTGTGTGAAATGGAATTCATGGTATTTTCTGTAACATTTTCCTGAAGCTGTTTCT GGAGAGCCACACATTCGAATACAGCTTTCTTGATCATTTGATTTACTGTGCACCTGATTT TTGGTCTAAAAGAAATTATTGCCACAACATATTTTATTTATTCTTTAGATTTTAGCCTCG TAAGTTAAAAGTGCTTTACATGATGATGTTAAAAGCTATTTGTCCCTTGACTGGGTTTGG GGGGTTGTTAAAAGATAGGGAATGAAGAATGCAAAATGGTTTATTGTTCAAACTGTCCAC TCTGATCCAACCCTGTACTGATAGTAGTACCTTTCCAGTATGATATTGTGATGTTTCATA CAATGCAGTGAACATAACCAACTTGTTACCTAAATAAAGAATTGATAAAAACAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAATAAAATCCAGTGTTGAATGTTATTTTGAACATTTT ATACAGTTAAAATAATTATTAGGAAAAATGTCATACAAAACCATGTAGGTGAATTACAAT TCCAAAGTGGAATTAACCAAACTCTATTGGACAATTCTAATAACCCCTTACCCACGCCCA AAACATTTTTTATACCACTTAAAAATTTTTTTTCGGGGGGTTTGCTGGCTCTGGAAAATA CAAATAGTGTGTGAGTTAGCAAAAGAAAAATCCATATTCAATATTTAGTAATCCAGATTC CATAGTCCAGCTGTTTTCAAAAACTCTTTAGGTCTCGGGACCCATTTTTTCCTAAAAATT CCAGATCCCAAAGAACTTTTGCTGTTTAATGTATTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTTCTCTATAGGAATGGACAAGTCTGCTTTTCTACCCAGGATCACAAACCTTGCAACCC AAGGGAGAAGGAGCGAATCCAAAATGCAGGAGGCAGTGTAATGATACAGCGTGTTAATGG TTCATTAGCGGTGTCTCGTGCTCTGGGGGACTATGATTACAAGTGTGTTGATGGCAAGGG CCCAACAGAACAACTTGTTTCTCCAGAGCCTGAGGTTTATGAAATTTTAAGAGCAGAAGA GGATGAATTTATCATCTTGGCTTGTGATGGGATCTGGGATGTTATGAGTAATGAGGAGCT CTGTGAATTTGTGGACACTTGTTTACATAAGGGAAGTCGAGATAACATGAGTATTGTACT AGTTTGCTTTTCAAATGCCCCCAAGGTCTCAGATGAAGCAATGAGAAAAGACTCAGAATT GGATAAGTACTTGGAATCACGGGTGGAAGAAATTATGGAGAAGTCTGGTGAGGAAGGAAT GCCTGATCTTGCCCATGTCATGCGCATCTTGTCTGCCGAAAATATCCCAAATTTGCCTCC TGGGGGAGGTCTTGCTGGCAAGCGCAATGTTATTGAAGCTGTTTATAGTAGGCTGAATCC ACATAGAGAAAGTGATGGGGGTGCCGATGAAGCAGAGGAAGGTGGATCGCCTTATAAACC TTCTAAATGCTTCAGGCAAATGAGAATTAATCATAGGGGAAACTACCGACAACTTCTGGA GGAGATGCTGACTAGTTACAGGCTAGCTAAAGTAGAGGGAGAAGAAAGCCCTGCTGACCC AGCTGCTACAGCTACTTCTTCGAACAGTGATGCTGGAAACCCAGTGACAATGCAGGAAAG CCATACTGAATCAAAAAATGATCTTGCTGAATTAGACAGCTGTACTGAAGATGCAGGGAC AAAGATGGGTGGTGGAAAAATATGACTTGACTTTGTGGTAATATTTTTGTGATCTTTGAT TTGATGGTTTTTACTTAGGAAGTATAATGTATGCATTTATATAACCATTTTGTTATTTGA ATCTCGGTAAACTAGTTTTATTATCTTCATATAGCCTTGTTTTTTAAGAAGGCCTTTGCA TACATCTTTATCACATAGTTTGAAATTGGCTATTTATAGTACTTTGAATTTGATAAAATT ATATCTCACTTCATATTGTATGCCAGAAATGAGGCTACCGGTTATTAAAGTGAGTAGTTA AATTCATCCTAGATAGTAGGATTAGAGATTGCCAATTAGCAAGATGACCTTATATTGTGG AAAAGACTTGTTAATGTAGAATTATGCTGCTTTATATTACATTTTAGTACACTCATAGTT AGCTTTGTAATAAATTTGTGTTTTCTTTAGTAATTTTAGTTCTTCAAAGAATGGCAGATG CTGGGCTGTAATTTCTTTTTTCAAGGATGATAATTTGTGTGTTCTTTGACTTGTTTATAT TTTACATCTGTAGTTTTATTTTTAGCAGATCTGAGATACTGGATGTGTGGTTATTTTTCC TTTCTCTGTATTACAACAAGTTTTGTGTAATTTGGTATAATTTTTAATTGTTACGTTATT TTAAAAGCTCAGAATATCACATTGAAATGACTATAAGTACATTTAAAATTATCTATTTTA GATCTAAGGAAATATTACAGAGATATTTTCATGGGTTCAGTAACCTTTCATTTTATAACA TTGGGCACGGTACGGAGTGGCTGTCACATAAGGTACTTGAAGATTATTAGTTTAATTCTA TTTTTACAATAACCTTGAATCCTTGAATTCTTTTGAGTTTTGCATGTATCCAATTAATGC TGAACATGGAGAGTGAAATATTTATCTAAAAGAAGCTATTGGGGTAGGAGAAGCAATGAA TGTATCCATTTGTACATGGTTTACATGTTGTGGATGCTTTGTAAACATTTTCCTATCTGT TTAAATTGTGTTTCAGCAGGATGTAATTGCCCTTGTGTGTAGTTAAAATGAGTCATCATC TGGTCCTGTGTGAAATGGAATTCATGGTATTTTCTGTAACATTTTCCTGAAGCTGTTTCT GGAGAGCCACACATTCGAATACAGCTTTCTTGATCATTTGATTTACTGTGCACCTGATTT TTGGTCTAAAAGAAATTATTGCCACAACATATTTTATTTATTCTTTAGATTTTAGCCTCG TAAGTTAAAAGTGCTTTACATGATGATGTTAAAAGCTATTTGTCCCTTGACTGGGTTTGG GGGGTTGTTAAAAGATAGGGAATGAAGAATGCAAAATGGTTTATTGTTCAAACTGTCCAC TCTGATCCAACCCTGTACTGATAGTAGTACCTTTCCAGTATGATATTGTGATGTTTCATA CAATGCAGTGAACATAACCAACTTGTTACCTAAATAAAGAATTGATAAAAACAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAATAAAATCCAGTGTTGAATGTTATTTTGAACATTTT ATACAGTTAAAATAATTATTAGGAAAAATGTCATACAAAACCATGTAGGTGAATTACAAT TCCAAAGTGGAATTAACCAAACTCTATTGGACAATTCTAATAACCCCTTACCCACGCCCA AAACATTTTTTATACCACTTAAAAATTTTTTTTCGGGGGGTTTGCTGGCTCTGGAAAATA CAAATAGTGTGTGAGTTAGCAAAAGAAAAATCCATATTCAATATTTAGTAATCCAGATTC CATAGTCCAGCTGTTTTCAAAAACTCTTTAGGTCTCGGGACCCATTTTTTCCTAAAAATT CCAGATCCCAAAGAACTTTTGCTGTTTAATGTATTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 120-312, + strand, RNAz p=0.987224 | |
| 1824-1942, - strand, RNAz p=0.885223 | |
| 2135-2252, - strand, RNAz p=0.788127 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 120-312, + strand, RNAz p=0.987224 | |
| 1824-1942, - strand, RNAz p=0.885223 | |
| 2135-2252, - strand, RNAz p=0.788127 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-312, gnl|bosTau2|chr11 (13387723-13388034) | |
| 1-312, gnl|canFam2|chr10 (49769147-49769784) | |
| 1-312, gnl|danRer3|chr13 (6862307-6862944) | |
| 1-312, gnl|dasNov1|scaffold_17330 (9477-10113) | |
| 1-312, gnl|echTel1|scaffold_309069 (51030-50390) | |
| 1-312, gnl|fr1|chrUn (141829983-141830665) | |
| 1-312, gnl|galGal2|chr3 (21784460-21785097) | |
| 1-312, gnl|hg17|chr2 (44340213-44340850) | |
| 1-312, gnl|Hg17|chr2 (44340451-44340762) | |
| 1-312, gnl|loxAfr1|scaffold_16087 (33071-32434) | |
| 1-312, gnl|mm7|chr17 (83288765-83289402) | |
| 1-312, gnl|Mm7|chr17 (83289003-83289314) | |
| 1-312, gnl|monDom2|scaffold_1 (2922723-2923360) | |
| 1-312, gnl|oryCun1|scaffold_160610 (3067-2429) | |
| 1-312, gnl|panTro1|chr12 (46014809-46015446) | |
| 1-312, gnl|rheMac2|chr13 (44332047-44332684) | |
| 1-312, gnl|rn3|chr6 (8349337-8349974) | |
| 1-312, gnl|tetNig1|chr17 (10987988-10987315) | |
| 1-312, gnl|xenTro1|scaffold_30 (2550216-2550850) | |
| 319-449, gnl|bosTau2|chr11 (13396655-13396786) | |
| 319-449, gnl|canFam2|chr10 (49777364-49777518) | |
| 319-449, gnl|danRer3|chr13 (6863007-6863160) | |
| 319-449, gnl|dasNov1|scaffold_2214 (20184-20029) | |
| 319-449, gnl|echTel1|scaffold_309069 (41246-41096) | |
| 319-449, gnl|fr1|chrUn (141830798-141830957) | |
| 319-449, gnl|galGal2|chr3 (21787081-21787232) | |
| 319-449, gnl|hg17|chr2 (44347974-44348129) | |
| 319-449, gnl|Hg17|chr2 (44347984-44348117) | |
| 319-449, gnl|loxAfr1|scaffold_107879 (5807-5653) | |
| 319-449, gnl|mm7|chr17 (83298088-83298243) | |
| 319-449, gnl|Mm7|chr17 (83298100-83298231) | |
| 319-449, gnl|monDom2|scaffold_1 (2935426-2935587) | |
| 319-449, gnl|oryCun1|scaffold_208713 (2865-3025) | |
| 319-449, gnl|panTro1|chr12 (46022771-46022926) | |
| 319-449, gnl|rheMac2|chr13 (44340150-44340305) | |
| 319-449, gnl|rn3|chr6 (8356749-8356904) | |
| 319-449, gnl|tetNig1|chr17 (10987213-10987052) | |
| 319-449, gnl|xenTro1|scaffold_30 (2552230-2552375) | |
| 1434-2770, gnl|bosTau2|chr11 (13412596-13413931) | |
| 1434-2770, gnl|Hg17|chr2 (44371906-44373450) | |
| 1434-2770, gnl|Mm7|chr17 (83311047-83312294) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-312, gnl|bosTau2|chr11 (13387723-13388034) | |
| 1-312, gnl|canFam2|chr10 (49769147-49769784) | |
| 1-312, gnl|danRer3|chr13 (6862307-6862944) | |
| 1-312, gnl|dasNov1|scaffold_17330 (9477-10113) | |
| 1-312, gnl|echTel1|scaffold_309069 (51030-50390) | |
| 1-312, gnl|fr1|chrUn (141829983-141830665) | |
| 1-312, gnl|galGal2|chr3 (21784460-21785097) | |
| 1-312, gnl|hg17|chr2 (44340213-44340850) | |
| 1-312, gnl|Hg17|chr2 (44340451-44340762) | |
| 1-312, gnl|loxAfr1|scaffold_16087 (33071-32434) | |
| 1-312, gnl|mm7|chr17 (83288765-83289402) | |
| 1-312, gnl|Mm7|chr17 (83289003-83289314) | |
| 1-312, gnl|monDom2|scaffold_1 (2922723-2923360) | |
| 1-312, gnl|oryCun1|scaffold_160610 (3067-2429) | |
| 1-312, gnl|panTro1|chr12 (46014809-46015446) | |
| 1-312, gnl|rheMac2|chr13 (44332047-44332684) | |
| 1-312, gnl|rn3|chr6 (8349337-8349974) | |
| 1-312, gnl|tetNig1|chr17 (10987988-10987315) | |
| 1-312, gnl|xenTro1|scaffold_30 (2550216-2550850) | |
| 319-449, gnl|bosTau2|chr11 (13396655-13396786) | |
| 319-449, gnl|canFam2|chr10 (49777364-49777518) | |
| 319-449, gnl|danRer3|chr13 (6863007-6863160) | |
| 319-449, gnl|dasNov1|scaffold_2214 (20184-20029) | |
| 319-449, gnl|echTel1|scaffold_309069 (41246-41096) | |
| 319-449, gnl|fr1|chrUn (141830798-141830957) | |
| 319-449, gnl|galGal2|chr3 (21787081-21787232) | |
| 319-449, gnl|hg17|chr2 (44347974-44348129) | |
| 319-449, gnl|Hg17|chr2 (44347984-44348117) | |
| 319-449, gnl|loxAfr1|scaffold_107879 (5807-5653) | |
| 319-449, gnl|mm7|chr17 (83298088-83298243) | |
| 319-449, gnl|Mm7|chr17 (83298100-83298231) | |
| 319-449, gnl|monDom2|scaffold_1 (2935426-2935587) | |
| 319-449, gnl|oryCun1|scaffold_208713 (2865-3025) | |
| 319-449, gnl|panTro1|chr12 (46022771-46022926) | |
| 319-449, gnl|rheMac2|chr13 (44340150-44340305) | |
| 319-449, gnl|rn3|chr6 (8356749-8356904) | |
| 319-449, gnl|tetNig1|chr17 (10987213-10987052) | |
| 319-449, gnl|xenTro1|scaffold_30 (2552230-2552375) | |
| 1434-2770, gnl|bosTau2|chr11 (13412596-13413931) | |
| 1434-2770, gnl|Hg17|chr2 (44371906-44373450) | |
| 1434-2770, gnl|Mm7|chr17 (83311047-83312294) |
| Expressed library(ies): 37 entry(ies) | More info |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
| bfe (1.79829) | |
| fco (1.25766) | |
| isp (0.902256) | |
| lin (0.728014) | |
| sme (0.610874) | |
| liv (0.585137) | |
| ste (0.540833) | |
| ret (0.514933) | |
| ldo (0.485013) | |
| tbr (0.462535) | |
| aor (0.390549) | |
| cbl (0.344392) | |
| vin (0.332557) | |
| cte (0.29274) | |
| lnt (0.284616) | |
| kid (0.259471) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ill (0.175593) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| pla (0.133672) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (1.79829) | |
| fco (1.25766) | |
| isp (0.902256) | |
| lin (0.728014) | |
| sme (0.610874) | |
| liv (0.585137) | |
| ste (0.540833) | |
| ret (0.514933) | |
| ldo (0.485013) | |
| tbr (0.462535) | |
| aor (0.390549) | |
| cbl (0.344392) | |
| vin (0.332557) | |
| cte (0.29274) | |
| lnt (0.284616) | |
| kid (0.259471) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ill (0.175593) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| pla (0.133672) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) |