Non-Coding RNA Search

Ss1.1-rpfco0139_l16.5

Sequence:


               
               AATAGAACTAACTTAAAATGGGATTCAAGAGATTGCCATTAGTTTTATCATGCTATTCTA
AGCTTTTAATTATAATCATGATTTTCAAAAGACTCTAACATACGTTATTATTATCGACAG
TCTTTAGCAAAATGATGAGAACTGAAATTTTAAGTTATATTAAAACATAGCTTAGGAACC
AACATTGAAGTATTATTCCCAATATCTCTCTTCTCATAAGTCTGCTCCACTGGATTAAAG
GACAAATACTTTTTCTCTTCATTTTTAATAAATTAAATGTTATATTTGAAAAGTAGCCAT
GTAAAGATGCATAAGTAAGTCAAGAATTTTCAGGTATTGCTCAAATGTTATTACTAGTTT
CTATGAGTGATTTAAATGTATTTTTTAAAGTCAGTGTATTCCTAAAGGCAGTAATAAGAA
ATACCGAATATCTTTGCTCTCAAAACAGATAAGCGTTATAGATTTGTTTTTGTTAGATGA
TTTGGTGTGTACTAGAAAATTTATTTAAATGGACTGTGAAATATCCATTAATATAGATGT
GGACGTCAAAGAATGTTTCCAAGGTGTTATGTTATGACATATCAACTAGTTCTTCCATGT
AAGATAATTTTAGTGCAATACAAACTTAAGTGGAAAAGTAAAACATGATCTGAATTGCTA
TCCTTTGTATTAAAACGGTTTAAAGTGTAAGAATTCTATTCATTGTGTTTAGAGTACTTT
TTATGTTTTATAATAAGCATGACAAAAATGGGAGGGGAACAGTTATAGTTCTATCCACAG
AAATAGCAATTTGTAGAATTGATAGAATTTTTAAGACATTAGAAAACAAGTTAAGAGTGT
TCTTTTTGCTTCAATTTTTATTTTTTTCATAAAAGATTTTTGTCATATATTGGTAAAAAT
TATATGAACTGGTTTCATTGTCAAAATCTTTATTTTAAAATAAATATGTATCTTTGTATG
ATTTATAAGTGTATCCACAGGTAAAAATACATGTGTTCCTAAAACTATTTTGTATATTTT
CATTTCTGGGCTACACTGTACCTGAATACTGTTATCAAATCTCAAAATAATTTAAATGTG
TAAAATAAGTATCTCAGTTATGTTATTAATAAATGAGGACTGCAAATATTTTTTAAATAA
AAATTTGCATTCTATATCTGTTACAAAATACATAGGATCTTAAAAATAAAATTTATTCAT
GTTTCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAGAACTAACTTAAAATGGGATTCAAGAGATTGCCATTAGTTTTATCATGCTATTCTA
AGCTTTTAATTATAATCATGATTTTCAAAAGACTCTAACATACGTTATTATTATCGACAG
TCTTTAGCAAAATGATGAGAACTGAAATTTTAAGTTATATTAAAACATAGCTTAGGAACC
AACATTGAAGTATTATTCCCAATATCTCTCTTCTCATAAGTCTGCTCCACTGGATTAAAG
GACAAATACTTTTTCTCTTCATTTTTAATAAATTAAATGTTATATTTGAAAAGTAGCCAT
GTAAAGATGCATAAGTAAGTCAAGAATTTTCAGGTATTGCTCAAATGTTATTACTAGTTT
CTATGAGTGATTTAAATGTATTTTTTAAAGTCAGTGTATTCCTAAAGGCAGTAATAAGAA
ATACCGAATATCTTTGCTCTCAAAACAGATAAGCGTTATAGATTTGTTTTTGTTAGATGA
TTTGGTGTGTACTAGAAAATTTATTTAAATGGACTGTGAAATATCCATTAATATAGATGT
GGACGTCAAAGAATGTTTCCAAGGTGTTATGTTATGACATATCAACTAGTTCTTCCATGT
AAGATAATTTTAGTGCAATACAAACTTAAGTGGAAAAGTAAAACATGATCTGAATTGCTA
TCCTTTGTATTAAAACGGTTTAAAGTGTAAGAATTCTATTCATTGTGTTTAGAGTACTTT
TTATGTTTTATAATAAGCATGACAAAAATGGGAGGGGAACAGTTATAGTTCTATCCACAG
AAATAGCAATTTGTAGAATTGATAGAATTTTTAAGACATTAGAAAACAAGTTAAGAGTGT
TCTTTTTGCTTCAATTTTTATTTTTTTCATAAAAGATTTTTGTCATATATTGGTAAAAAT
TATATGAACTGGTTTCATTGTCAAAATCTTTATTTTAAAATAAATATGTATCTTTGTATG
ATTTATAAGTGTATCCACAGGTAAAAATACATGTGTTCCTAAAACTATTTTGTATATTTT
CATTTCTGGGCTACACTGTACCTGAATACTGTTATCAAATCTCAAAATAATTTAAATGTG
TAAAATAAGTATCTCAGTTATGTTATTAATAAATGAGGACTGCAAATATTTTTTAAATAA
AAATTTGCATTCTATATCTGTTACAAAATACATAGGATCTTAAAAATAAAATTTATTCAT
GTTTCAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               16-1210, gnl|bosTau2|chr28 (16849995-16851197)
               

               
               16-1210, gnl|Hg17|chr10 (69912922-69910133)
               

               
               16-1210, gnl|Mm7|chr10 (62463722-62465294)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-1210, gnl|bosTau2|chr28 (16849995-16851197)
               

               
               16-1210, gnl|Hg17|chr10 (69912922-69910133)
               

               
               16-1210, gnl|Mm7|chr10 (62463722-62465294)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fco (1.41487)
               

               
               ret (0.257467)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.41487)
               

               
               ret (0.257467)

	16-1210, gnl\|bosTau2\|chr28 (16849995-16851197)
	16-1210, gnl\|Hg17\|chr10 (69912922-69910133)
	16-1210, gnl\|Mm7\|chr10 (62463722-62465294)