Non-Coding RNA Search

Ss1.1-rpfco0139_l19.5

Sequence:


               
               TACTTTCCTTGCCTTCTGTGGCTGACTGTTAGTGTTAGGACTGCAGAGACAACGTGGCTG
TCCTTAGCAATGTTTATGAATCACGTGCACTTGAGTGGTCCATTTTTTCTTTTTTCTCGG
GTGGACTAAGGCTGACCGCAAAGTAGATTTTGAGAGCAGTGCACATCTTCCTCTCTGGTT
CAAGTACACTGCCAAAAGCCATGTCTTTAATCTTAGAAAAAGATTTAAAAATGTAGGTCT
AAAGATCCTAAGTATCAACTTCCGCTATCACAATGACAAAATCTGTTCCATTGTCACTTG
CCTTTTAAAACTCTTTGACAAGTAGATTTCAACAACCAGAGATTTCAAAATCTGCCTGTT
ACACTGGTGAAGGACATTTGCATTTTTTCATTTAAAGGAATTAGCGTATTCTCCTGGCTC
ATCCCTCTTGGGTACTTTCTGTTCTAATACACAGAAAGCTTCATCATCGTTGATCCACAG
AAGTATCTTTATTTAGCAAACCTCAACTTTCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTTTCCTTGCCTTCTGTGGCTGACTGTTAGTGTTAGGACTGCAGAGACAACGTGGCTG
TCCTTAGCAATGTTTATGAATCACGTGCACTTGAGTGGTCCATTTTTTCTTTTTTCTCGG
GTGGACTAAGGCTGACCGCAAAGTAGATTTTGAGAGCAGTGCACATCTTCCTCTCTGGTT
CAAGTACACTGCCAAAAGCCATGTCTTTAATCTTAGAAAAAGATTTAAAAATGTAGGTCT
AAAGATCCTAAGTATCAACTTCCGCTATCACAATGACAAAATCTGTTCCATTGTCACTTG
CCTTTTAAAACTCTTTGACAAGTAGATTTCAACAACCAGAGATTTCAAAATCTGCCTGTT
ACACTGGTGAAGGACATTTGCATTTTTTCATTTAAAGGAATTAGCGTATTCTCCTGGCTC
ATCCCTCTTGGGTACTTTCTGTTCTAATACACAGAAAGCTTCATCATCGTTGATCCACAG
AAGTATCTTTATTTAGCAAACCTCAACTTTCCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               371-511, - strand, RNAz p=0.980073

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               371-511, - strand, RNAz p=0.980073

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               390-509, 7l37f09.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapiens cDNA clone 
(gb|BF112019.1|), blast E-value=7e-25, identity=88.43% 
               

               
               390-509, 7q08c12.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE 
(gb|BF438353.1|), blast E-value=7e-25, identity=88.43% 
               

               
               390-509, UI-H-BW1-anz-d-12-0-UI.s1 NCI_CGAP_Sub7 Homo sapiens cDNA clone 
(gb|BF516294.1|), blast E-value=7e-25, identity=88.43% 
               

               
               390-509, AGENCOURT_7852620 NIH_MGC_67 Homo sapiens cDNA clone IMAGE 
(gb|BU180658.1|), blast E-value=7e-25, identity=88.43% 
               

               
               383-509, UI-CF-FN0-afl-p-12-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone 
(gb|CA312923.1|), blast E-value=1e-26, identity=88.28% 
               

               
               390-509, 17000600176864 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN336720.1|), blast E-value=7e-25, identity=88.43%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               390-509, 7l37f09.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapiens cDNA clone 
(gb|BF112019.1|), blast E-value=7e-25, identity=88.43% 
               

               
               390-509, 7q08c12.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE 
(gb|BF438353.1|), blast E-value=7e-25, identity=88.43% 
               

               
               390-509, UI-H-BW1-anz-d-12-0-UI.s1 NCI_CGAP_Sub7 Homo sapiens cDNA clone 
(gb|BF516294.1|), blast E-value=7e-25, identity=88.43% 
               

               
               390-509, AGENCOURT_7852620 NIH_MGC_67 Homo sapiens cDNA clone IMAGE 
(gb|BU180658.1|), blast E-value=7e-25, identity=88.43% 
               

               
               383-509, UI-CF-FN0-afl-p-12-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone 
(gb|CA312923.1|), blast E-value=1e-26, identity=88.28% 
               

               
               390-509, 17000600176864 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN336720.1|), blast E-value=7e-25, identity=88.43%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001001484, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001001484, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-511, gnl|bosTau2|chr13 (20151984-20152474)
               

               
               23-511, gnl|Hg17|chr10 (16595106-16594599)
               

               
               23-511, gnl|Mm7|chr2 (12942022-12941547)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-511, gnl|bosTau2|chr13 (20151984-20152474)
               

               
               23-511, gnl|Hg17|chr10 (16595106-16594599)
               

               
               23-511, gnl|Mm7|chr2 (12942022-12941547)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fco (0.157208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	390-509, 7l37f09.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapiens cDNA clone (gb\|BF112019.1\|), blast E-value=7e-25, identity=88.43%
	390-509, 7q08c12.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE (gb\|BF438353.1\|), blast E-value=7e-25, identity=88.43%
	390-509, UI-H-BW1-anz-d-12-0-UI.s1 NCI_CGAP_Sub7 Homo sapiens cDNA clone (gb\|BF516294.1\|), blast E-value=7e-25, identity=88.43%
	390-509, AGENCOURT_7852620 NIH_MGC_67 Homo sapiens cDNA clone IMAGE (gb\|BU180658.1\|), blast E-value=7e-25, identity=88.43%
	383-509, UI-CF-FN0-afl-p-12-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone (gb\|CA312923.1\|), blast E-value=1e-26, identity=88.28%
	390-509, 17000600176864 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence (gb\|CN336720.1\|), blast E-value=7e-25, identity=88.43%

	23-511, gnl\|bosTau2\|chr13 (20151984-20152474)
	23-511, gnl\|Hg17\|chr10 (16595106-16594599)
	23-511, gnl\|Mm7\|chr2 (12942022-12941547)