Non-Coding RNA Search

Ss1.1-rpfco0139_n16.5

Sequence:


               
               TTACAGTGCAGCAGCAACCCACAGACATTTGTATCATCAAGCTTTTCCTGCACCAAAGTC
AGAATCTACCGAACAATCAGAAAAGAAGAAAATTTAATCCAAACTTTAAAGATACAGGTG
CATGACCAAAATGTCAGTTAAATATTGTTTTATGTCTCCATGCAAACATTCAAAGTGCTT
CCATCAGAACAGAGTAAAACACCAAGCACCTCTGAAGACTGCAAAAGGGTTTTAGTTCTT
TTACTTCAGTGTTTAATAAGCAGATGTATATATGCATGGTTATATCATTTGGTTAACATG
TACAGTTTCCTGATTTAGTCTTCAAATATGCTGTTATAATTTAAAGAGTTTGTCTATTTA
TGGTAACAGTACCTGTGTTCTGCTTGAATTTACTAAATTCTAATATCAGGTTATAGTTAA
ACCATGTAGTAATACTACTCCACATTTGGATATGCTCATTTTATTTCTATAGAAGAATTT
TTAAATTATTCACATTGTCATTTGTTAAAGAATTGCATAACTCCCGTAGGCTTGATTCAA
CCTATACCATCTTACATATCCCATTGGCTTTTATTTTAAAAGACATTTAAAAGAGCTTTT
CAGTTGCTTTATCAAAAACTATATATTGCTTCTTCTTTTATATTATGATTTAATATAGCA
TATAAACCTCTTGATCAAAAAATGCACAAAAAAATCACTCTGTATATGTATTTGAGTTTC
ACTGCATTGTATATTTTTTCATTTGGTACACAGAGAAATGTATTCATTATAGGTTTATTC
TTTTAACATGTGAACTATTATTAAAGTTTACTCTGGTTCCTAAGATTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACAGTGCAGCAGCAACCCACAGACATTTGTATCATCAAGCTTTTCCTGCACCAAAGTC
AGAATCTACCGAACAATCAGAAAAGAAGAAAATTTAATCCAAACTTTAAAGATACAGGTG
CATGACCAAAATGTCAGTTAAATATTGTTTTATGTCTCCATGCAAACATTCAAAGTGCTT
CCATCAGAACAGAGTAAAACACCAAGCACCTCTGAAGACTGCAAAAGGGTTTTAGTTCTT
TTACTTCAGTGTTTAATAAGCAGATGTATATATGCATGGTTATATCATTTGGTTAACATG
TACAGTTTCCTGATTTAGTCTTCAAATATGCTGTTATAATTTAAAGAGTTTGTCTATTTA
TGGTAACAGTACCTGTGTTCTGCTTGAATTTACTAAATTCTAATATCAGGTTATAGTTAA
ACCATGTAGTAATACTACTCCACATTTGGATATGCTCATTTTATTTCTATAGAAGAATTT
TTAAATTATTCACATTGTCATTTGTTAAAGAATTGCATAACTCCCGTAGGCTTGATTCAA
CCTATACCATCTTACATATCCCATTGGCTTTTATTTTAAAAGACATTTAAAAGAGCTTTT
CAGTTGCTTTATCAAAAACTATATATTGCTTCTTCTTTTATATTATGATTTAATATAGCA
TATAAACCTCTTGATCAAAAAATGCACAAAAAAATCACTCTGTATATGTATTTGAGTTTC
ACTGCATTGTATATTTTTTCATTTGGTACACAGAGAAATGTATTCATTATAGGTTTATTC
TTTTAACATGTGAACTATTATTAAAGTTTACTCTGGTTCCTAAGATTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-835, gnl|bosTau2|chr10 (29048811-29049635)
               

               
               1-835, gnl|Hg17|chr14 (50168711-50169516)
               

               
               1-835, gnl|Mm7|chr12 (67904234-67905026)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-835, gnl|bosTau2|chr10 (29048811-29049635)
               

               
               1-835, gnl|Hg17|chr14 (50168711-50169516)
               

               
               1-835, gnl|Mm7|chr12 (67904234-67905026)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fco (1.72929)
               

               
               bfe (0.299715)
               

               
               fcc (0.197785)
               

               
               ret (0.128733)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.72929)
               

               
               bfe (0.299715)
               

               
               fcc (0.197785)
               

               
               ret (0.128733)

	1-835, gnl\|bosTau2\|chr10 (29048811-29049635)
	1-835, gnl\|Hg17\|chr14 (50168711-50169516)
	1-835, gnl\|Mm7\|chr12 (67904234-67905026)