Non-Coding RNA Search

Ss1.1-rpfco0139_p2.5

Sequence:


               
               TTTTTTTTTCTTTTTTTTAAATGAGAAAAGGTTTTGTGAATTTTACTTTAGGATGACCCT
AGACATTACATATTCCTCGGGTCATATTGAAAAGCAAAAGAGGGGCAGGATTGGGGTCAC
AGCTACCTGTTCAGCATGGACCAAGTGGGCCTTGGGGATCACAGCATTCTCCAGGAGCGG
CTACAGGACTCTGATTTACAGAAAGCCAAGGAGGTGCAACTCGAGGCTCTACTAGCAAAG
CACCGATGAGACTTGGGCAGCCAGCTTTCTGTATAGGAGATTGGGATCTAGGTTCTGTCA
TTTGTCAACCAACAAGGACGATTATGCAACTCATAAACACATTACCCTGAATAACTGGCC
AGCCGTTCATCGAATCCTTGATGGGTAGTCCTGAAATCAGACACGTTCCTGTAGAAAGAA
TTTTAAGTGAGGCTGTCTATCTATCTATGCATCTCTCAAGAATAAAGAGAATAGATTATA
TCAAACAACGGCAGGGAAAATCAAAATCCTTCAGCAATTCTCAGCCACTTTGGGTTTTCA
GCAGTAAGATACATCTAAAGCAATATCAGACTAGAACTGAATTCTTTTCTATGCTGTAAA
ATCAAAATTGTGGAATTACAGGAATTCTGGTGATGATATTAAGGTGAAATAACCAAAACA
CACAAAAATAGAAGGCCCTATTTTAACAGCTGATATGAAAAGAAATTGTAATAAGAGAGA
TCCTGTAACTTCACTTTGGAAATGTTTTCCCACTAAATAAGGGCTTTTCCCTCCTATTAC
TTAAGGAGCCAGATGAATTAAAAGCCGTAGAAAGAGGCAGCTGTAGAATTTGATCTTCTA
AGTACCCCACGTACCTTTACTGAACTTAATCATAATGTTGTCAGATTGCCACGATCTCAC
TGAAGAATTTCTATTTGCTGTCAGTAAAAAATAAAACCCTGGATACATTTTTATTCTTTC
TACTGAGTGCATTGTCTTGTTTTCTTTGTAAATGCAGTACAATAAACAAATTATTTAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTCTTTTTTTTAAATGAGAAAAGGTTTTGTGAATTTTACTTTAGGATGACCCT
AGACATTACATATTCCTCGGGTCATATTGAAAAGCAAAAGAGGGGCAGGATTGGGGTCAC
AGCTACCTGTTCAGCATGGACCAAGTGGGCCTTGGGGATCACAGCATTCTCCAGGAGCGG
CTACAGGACTCTGATTTACAGAAAGCCAAGGAGGTGCAACTCGAGGCTCTACTAGCAAAG
CACCGATGAGACTTGGGCAGCCAGCTTTCTGTATAGGAGATTGGGATCTAGGTTCTGTCA
TTTGTCAACCAACAAGGACGATTATGCAACTCATAAACACATTACCCTGAATAACTGGCC
AGCCGTTCATCGAATCCTTGATGGGTAGTCCTGAAATCAGACACGTTCCTGTAGAAAGAA
TTTTAAGTGAGGCTGTCTATCTATCTATGCATCTCTCAAGAATAAAGAGAATAGATTATA
TCAAACAACGGCAGGGAAAATCAAAATCCTTCAGCAATTCTCAGCCACTTTGGGTTTTCA
GCAGTAAGATACATCTAAAGCAATATCAGACTAGAACTGAATTCTTTTCTATGCTGTAAA
ATCAAAATTGTGGAATTACAGGAATTCTGGTGATGATATTAAGGTGAAATAACCAAAACA
CACAAAAATAGAAGGCCCTATTTTAACAGCTGATATGAAAAGAAATTGTAATAAGAGAGA
TCCTGTAACTTCACTTTGGAAATGTTTTCCCACTAAATAAGGGCTTTTCCCTCCTATTAC
TTAAGGAGCCAGATGAATTAAAAGCCGTAGAAAGAGGCAGCTGTAGAATTTGATCTTCTA
AGTACCCCACGTACCTTTACTGAACTTAATCATAATGTTGTCAGATTGCCACGATCTCAC
TGAAGAATTTCTATTTGCTGTCAGTAAAAAATAAAACCCTGGATACATTTTTATTCTTTC
TACTGAGTGCATTGTCTTGTTTTCTTTGTAAATGCAGTACAATAAACAAATTATTTAATA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               321-1020, gnl|bosTau2|chr13 (3454333-3455001)
               

               
               321-1020, gnl|Hg17|chr6 (35909462-35908794)
               

               
               321-1020, gnl|Mm7|chr17 (26774758-26774113)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               321-1020, gnl|bosTau2|chr13 (3454333-3455001)
               

               
               321-1020, gnl|Hg17|chr6 (35909462-35908794)
               

               
               321-1020, gnl|Mm7|chr17 (26774758-26774113)

Expressed library(ies): 28 entry(ies)

More info

Expressed library(ies): 28 entry(ies)

Help | Less info


               
               lin (0.728014)
               

               
               thg (0.633955)
               

               
               gul (0.532765)
               

               
               cki (0.330469)
               

               
               cte (0.29274)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.728014)
               

               
               thg (0.633955)
               

               
               gul (0.532765)
               

               
               cki (0.330469)
               

               
               cte (0.29274)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	321-1020, gnl\|bosTau2\|chr13 (3454333-3455001)
	321-1020, gnl\|Hg17\|chr6 (35909462-35908794)
	321-1020, gnl\|Mm7\|chr17 (26774758-26774113)

	lin (0.728014)
	thg (0.633955)
	gul (0.532765)
	cki (0.330469)
	cte (0.29274)
	tes (0.207814)
	fcc (0.197785)
	aor (0.195274)
	nlu (0.191681)
	ill (0.175593)
	sin (0.174948)
	fhi (0.169578)
	nje (0.16592)
	fco (0.157208)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	cst (0.140036)
	che (0.136314)
	ste (0.135208)
	pla (0.133672)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	ebs (0.118301)
	ldo (0.0970026)