Non-Coding RNA Search

Ss1.1-rpfco0140_a13.5

Sequence:


               
               TCGAGACGCTGGGAGATAAAGATGGACATAGCATTAGGAGCGTTCTTAAGGAGGGGATAG
GAAGTAGGTGCAGAACCTACCAGTTCAACTTATCAGTACAACTGTGAATCCCAGGTGAGG
TACAAAAGCACCCCCGCGGAAACGAAGTGTTTCTGACCACTTTTCTCTTGGTTGTGAATC
TTAATTTTGAATATAAGATGATAGGCAAGTGCAGCTTTCTTGGATAATCTCAATTCCCAA
GTGCCAGGAGTAGGATTTCATTATAAAATTAATAGCTCATCTTATTCTGTCTCCTGAAGA
TTGAATTGCTCTTCTTGTTACCCATTTGAAATCAGCTGTACTGTGTGAACGAAATCCAGA
CAATAACTCGAACCCCTCTCTGGCTGCACGGTCGCTTATGGCAGTTCCACACAGTAGTTG
GCGCCCAACGGGGGGTCCCTGAGACTTGCATGTAAAACTAGTCTAGATGTCTTCTTTTTG
TAAGTTTTATTTTTGTAATTGTGCATGCAGAGCCTCATTGAATCAATGGATCTGTTGAAG
AACTCAGCTGCTGGAAACCATGCAAAATGTTTTGAATTGCCCTTAAAATATGGAAAATGT
TTTCTGAATGCTTTATATTCTTTCTGCTGTAAATTAAAAACGAAGAAAATTTCCCCATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGAGACGCTGGGAGATAAAGATGGACATAGCATTAGGAGCGTTCTTAAGGAGGGGATAG
GAAGTAGGTGCAGAACCTACCAGTTCAACTTATCAGTACAACTGTGAATCCCAGGTGAGG
TACAAAAGCACCCCCGCGGAAACGAAGTGTTTCTGACCACTTTTCTCTTGGTTGTGAATC
TTAATTTTGAATATAAGATGATAGGCAAGTGCAGCTTTCTTGGATAATCTCAATTCCCAA
GTGCCAGGAGTAGGATTTCATTATAAAATTAATAGCTCATCTTATTCTGTCTCCTGAAGA
TTGAATTGCTCTTCTTGTTACCCATTTGAAATCAGCTGTACTGTGTGAACGAAATCCAGA
CAATAACTCGAACCCCTCTCTGGCTGCACGGTCGCTTATGGCAGTTCCACACAGTAGTTG
GCGCCCAACGGGGGGTCCCTGAGACTTGCATGTAAAACTAGTCTAGATGTCTTCTTTTTG
TAAGTTTTATTTTTGTAATTGTGCATGCAGAGCCTCATTGAATCAATGGATCTGTTGAAG
AACTCAGCTGCTGGAAACCATGCAAAATGTTTTGAATTGCCCTTAAAATATGGAAAATGT
TTTCTGAATGCTTTATATTCTTTCTGCTGTAAATTAAAAACGAAGAAAATTTCCCCATAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               9-659, gnl|bosTau2|chr16 (29857797-29858441)
               

               
               9-659, gnl|Hg17|chr1 (7763382-7764032)
               

               
               9-659, gnl|Mm7|chr4 (150049696-150049065)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-659, gnl|bosTau2|chr16 (29857797-29858441)
               

               
               9-659, gnl|Hg17|chr1 (7763382-7764032)
               

               
               9-659, gnl|Mm7|chr4 (150049696-150049065)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               fbs (0.350693)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

	9-659, gnl\|bosTau2\|chr16 (29857797-29858441)
	9-659, gnl\|Hg17\|chr1 (7763382-7764032)
	9-659, gnl\|Mm7\|chr4 (150049696-150049065)

	fbs (0.350693)
	fce (0.271592)
	cbe (0.239234)
	ece (0.229305)
	spc (0.226732)
	fhi (0.169578)
	mga (0.160205)
	fco (0.157208)
	liv (0.146284)
	pla (0.133672)
	sug (0.127291)
	pgl (0.118483)
	ecc (0.115035)