Non-Coding RNA Search

Ss1.1-rpfco0140_m2.5

Sequence:


               
               GGTAAGTCACTTTCATCTATTCCCTCACATATACTCTCTCTGAATTACTCATTCTTCCAC
TCTTCATTTTTTTCTTCTTTTCTCTCACCTCTCCAAAAATGTGTGACGGATGAGTTAGAA
AGATGTGCATTTTGGCTAATGTGAAAACTTTCCTATTTTCCTCCTTTTCACTTCAAGCCT
TTGTGATTACAGTGATTGAGCTACCTCATCAATTAATTTGAAAGGCTACACATCATGAGC
TCATGTTCAAGAATAGCACATCCCAGGTAAATAGACTAGGCAGTTATTTGACACTTGGGA
TGAGCATTATACTGAAAGCCGTTAGAAAACAAGCCCTAATGGTTCTTCATAACAACTGAT
TCCTCCAAGAAATATGACACACAGGGTATTTTTCTGTTTCATTATAAGATTATTCAGAGA
TTGGAAATATACAATTCTCTATTTCATCAGCATTAAGACTGCATATATGATAAGCTGTGA
AAGACTGCAATTACAAAGATAATTGTCTTAATTAAAGCAACCCTCATTCCATTTGGGTCT
TTATTATATTTCCCAAAAATACAAGTGAAAAAATTATTGCAAGTGTTTTAAATGTGTCGA
TTATTCTTTTTGTAAAACATTTTGTATTTATGTCAGTAAGGTTTTGTTGTGGAATAGTGA
TATACTATTTAAAAGTTTTGTGTATTTCTGAGAGAGAAAAAAATGTATACTAATATTAAA
ATATTTAATGAGCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAAGTCACTTTCATCTATTCCCTCACATATACTCTCTCTGAATTACTCATTCTTCCAC
TCTTCATTTTTTTCTTCTTTTCTCTCACCTCTCCAAAAATGTGTGACGGATGAGTTAGAA
AGATGTGCATTTTGGCTAATGTGAAAACTTTCCTATTTTCCTCCTTTTCACTTCAAGCCT
TTGTGATTACAGTGATTGAGCTACCTCATCAATTAATTTGAAAGGCTACACATCATGAGC
TCATGTTCAAGAATAGCACATCCCAGGTAAATAGACTAGGCAGTTATTTGACACTTGGGA
TGAGCATTATACTGAAAGCCGTTAGAAAACAAGCCCTAATGGTTCTTCATAACAACTGAT
TCCTCCAAGAAATATGACACACAGGGTATTTTTCTGTTTCATTATAAGATTATTCAGAGA
TTGGAAATATACAATTCTCTATTTCATCAGCATTAAGACTGCATATATGATAAGCTGTGA
AAGACTGCAATTACAAAGATAATTGTCTTAATTAAAGCAACCCTCATTCCATTTGGGTCT
TTATTATATTTCCCAAAAATACAAGTGAAAAAATTATTGCAAGTGTTTTAAATGTGTCGA
TTATTCTTTTTGTAAAACATTTTGTATTTATGTCAGTAAGGTTTTGTTGTGGAATAGTGA
TATACTATTTAAAAGTTTTGTGTATTTCTGAGAGAGAAAAAAATGTATACTAATATTAAA
ATATTTAATGAGCAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-731, gnl|bosTau2|chr10 (28673375-28672650)
               

               
               1-731, gnl|Hg17|chr14 (49781387-49779951)
               

               
               1-731, gnl|Mm7|chr12 (67632173-67631427)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-731, gnl|bosTau2|chr10 (28673375-28672650)
               

               
               1-731, gnl|Hg17|chr14 (49781387-49779951)
               

               
               1-731, gnl|Mm7|chr12 (67632173-67631427)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               pro (0.512033)
               

               
               ret (0.257467)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               ret (0.257467)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)

	1-731, gnl\|bosTau2\|chr10 (28673375-28672650)
	1-731, gnl\|Hg17\|chr14 (49781387-49779951)
	1-731, gnl\|Mm7\|chr12 (67632173-67631427)

	pro (0.512033)
	ret (0.257467)
	fhi (0.169578)
	fco (0.157208)
	bfe (0.149858)
	lnt (0.142308)