Non-Coding RNA Search

Ss1.1-rpfco0140_o23.5

Sequence:


               
               GGTGTGGGTAGCCCTACGTGATGACAAAACATGCTTTTAATTTTGGCTATGATGAATACC
CAGGTAACAACAGCTTAAACAAAGCTTCCCAGGCAGGAATCTCGTTTACTCTCTAACTGG
TGCATCTTCTTACAATCCAAGGATATACTAGATCCTGCCTCTGATTTGTTATTTGGTACA
ATCTCAGTGGAACCAATTGTGCCCTTTTCTGTTTGCACGTTTAAGATAAAATTTATCAAA
TCTTATTAAATAAAAACCACGAGAGTTAAATATTGAATTCTTTAAGGTTGTAAGTTGTTT
GTATTTTATTATATACTCTGTATGTGTAATTATTTTAGCCGAATGTTTGTTATTTGTGAA
AATGAACTGTTGTTGTGGTGGTTATATCTCTAGATTACATTAACACGAATGATGTTTTAA
CCTGTGAATATAATGATAACTTACTTCAAATTACCTACAAATTCAAAGGTTAAAATATTG
TTGTAAGGTTTAAAATAGAGTAGAACATTCTAAAGCACTAAACCACAGTTCTTCCGTTAC
TTCACATTATATGAACACTGAGCACTTGGTTCTCACCATTTCTATCCTGGCATTCTCTGG
TTTGTTGAATACACTGCTCATTCACACAGAAGGTAACAGGGTACCATCATTTATCACCAA
TTTATGTCACATTCTCAGCATTTCTCATCTTCATGTCTATAACTAAAGGACCTAAAATCA
CCACTCAGCTTGCCATCTTAATTTCTGGAATCTCATCCTCACCATCACCACTAAATCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGTGGGTAGCCCTACGTGATGACAAAACATGCTTTTAATTTTGGCTATGATGAATACC
CAGGTAACAACAGCTTAAACAAAGCTTCCCAGGCAGGAATCTCGTTTACTCTCTAACTGG
TGCATCTTCTTACAATCCAAGGATATACTAGATCCTGCCTCTGATTTGTTATTTGGTACA
ATCTCAGTGGAACCAATTGTGCCCTTTTCTGTTTGCACGTTTAAGATAAAATTTATCAAA
TCTTATTAAATAAAAACCACGAGAGTTAAATATTGAATTCTTTAAGGTTGTAAGTTGTTT
GTATTTTATTATATACTCTGTATGTGTAATTATTTTAGCCGAATGTTTGTTATTTGTGAA
AATGAACTGTTGTTGTGGTGGTTATATCTCTAGATTACATTAACACGAATGATGTTTTAA
CCTGTGAATATAATGATAACTTACTTCAAATTACCTACAAATTCAAAGGTTAAAATATTG
TTGTAAGGTTTAAAATAGAGTAGAACATTCTAAAGCACTAAACCACAGTTCTTCCGTTAC
TTCACATTATATGAACACTGAGCACTTGGTTCTCACCATTTCTATCCTGGCATTCTCTGG
TTTGTTGAATACACTGCTCATTCACACAGAAGGTAACAGGGTACCATCATTTATCACCAA
TTTATGTCACATTCTCAGCATTTCTCATCTTCATGTCTATAACTAAAGGACCTAAAATCA
CCACTCAGCTTGCCATCTTAATTTCTGGAATCTCATCCTCACCATCACCACTAAATCCTA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               68-172, - strand, RNAz p=0.998202
               

               
               86-192, - strand, RNAz p=0.993246
               

               
               392-511, - strand, RNAz p=0.533927

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               68-172, - strand, RNAz p=0.998202
               

               
               86-192, - strand, RNAz p=0.993246
               

               
               392-511, - strand, RNAz p=0.533927

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-780, gnl|bosTau2|chr6 (45410081-45410871)
               

               
               1-780, gnl|canFam2|chr13 (59002169-59003111)
               

               
               1-780, gnl|dasNov1|scaffold_811 (46915-47836)
               

               
               1-780, gnl|echTel1|scaffold_309197 (49872-48960)
               

               
               1-780, gnl|hg17|chr4 (66024972-66025899)
               

               
               1-780, gnl|Hg17|chr4 (66026090-66025306)
               

               
               1-780, gnl|loxAfr1|scaffold_2527 (34126-33209)
               

               
               1-780, gnl|mm7|chr5 (84001096-84002010)
               

               
               1-780, gnl|Mm7|chr5 (84002631-84001415)
               

               
               1-780, gnl|monDom2|scaffold_26 (30856073-30857173)
               

               
               1-780, gnl|oryCun1|scaffold_210885 (121574-120644)
               

               
               1-780, gnl|panTro1|chr3 (80627827-80626900)
               

               
               1-780, gnl|rheMac2|chr5 (64072718-64071796)
               

               
               1-780, gnl|rn3|chr14 (25885781-25884866)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr6 (45410081-45410871)
               

               
               1-780, gnl|canFam2|chr13 (59002169-59003111)
               

               
               1-780, gnl|dasNov1|scaffold_811 (46915-47836)
               

               
               1-780, gnl|echTel1|scaffold_309197 (49872-48960)
               

               
               1-780, gnl|hg17|chr4 (66024972-66025899)
               

               
               1-780, gnl|Hg17|chr4 (66026090-66025306)
               

               
               1-780, gnl|loxAfr1|scaffold_2527 (34126-33209)
               

               
               1-780, gnl|mm7|chr5 (84001096-84002010)
               

               
               1-780, gnl|Mm7|chr5 (84002631-84001415)
               

               
               1-780, gnl|monDom2|scaffold_26 (30856073-30857173)
               

               
               1-780, gnl|oryCun1|scaffold_210885 (121574-120644)
               

               
               1-780, gnl|panTro1|chr3 (80627827-80626900)
               

               
               1-780, gnl|rheMac2|chr5 (64072718-64071796)
               

               
               1-780, gnl|rn3|chr14 (25885781-25884866)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               fco (0.471624)
               

               
               sug (0.127291)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               sug (0.127291)

	68-172, - strand, RNAz p=0.998202
	86-192, - strand, RNAz p=0.993246
	392-511, - strand, RNAz p=0.533927

	1-780, gnl\|bosTau2\|chr6 (45410081-45410871)
	1-780, gnl\|canFam2\|chr13 (59002169-59003111)
	1-780, gnl\|dasNov1\|scaffold_811 (46915-47836)
	1-780, gnl\|echTel1\|scaffold_309197 (49872-48960)
	1-780, gnl\|hg17\|chr4 (66024972-66025899)
	1-780, gnl\|Hg17\|chr4 (66026090-66025306)
	1-780, gnl\|loxAfr1\|scaffold_2527 (34126-33209)
	1-780, gnl\|mm7\|chr5 (84001096-84002010)
	1-780, gnl\|Mm7\|chr5 (84002631-84001415)
	1-780, gnl\|monDom2\|scaffold_26 (30856073-30857173)
	1-780, gnl\|oryCun1\|scaffold_210885 (121574-120644)
	1-780, gnl\|panTro1\|chr3 (80627827-80626900)
	1-780, gnl\|rheMac2\|chr5 (64072718-64071796)
	1-780, gnl\|rn3\|chr14 (25885781-25884866)