Non-Coding RNA Search

Ss1.1-rpgl01_c22.5

Sequence:


               
               GTCAGTGTGTGCGCTATCTCAGTGTTTCAGTTTTTCAGCTGGTGGAATACCTATGACAAG
GCAATCAGCTACCTGGCCACGGTGCCCAAGTACCGCATCCAAGCCATGGAGATTGCCAAG
CAGCAGGGATTGCTCAGGAAAGCCAAAGAGAAGGGCAGAAACAAAAAGTCCAAAGAGGAA
ATTCGTGACGAGGAGGAAAACATCATAAAGAACATTATAAAAAGTAAAATAGATATAAAG
GGGGGCTGTCAGAAACCCCAGATACGTGACCTTCTCCTGTTTCAAATCCTCTTAGCTCCT
TTTCATCTGTGCTCATACATAGTCTGGTATTGCCGATGGATCTATAAATTTAACATCAAA
GGCAAAGAATATGGGGAAGAAGAAAGACTATATATCATACGTAAATCTATGAAGATGTCA
CAGTCTCAGTTTGATAGTCTAGAAGACCATCAGAAAGAAACTTTTCTTAAACGGGAGCTT
TGGATAAAGGAGAATTATGAGGTCTACAAAGAGGAACAAAAAGAAGAACTAAAGAAAAAA
TTGGCAAATGACCCTAGATGGAAGAGATATAGGAGATGGATGAAGAATGAAGGGCCTGGA
CGGCTAACATTTGTGGATGACTGAAGATTGCTGGAATGCGACTCTGCCAGACCTTATGTG
ATATTATTTTGATAACGGAATTATTTTAGAAATGTGTGGACTGCTCCTCAGCAGTAACTA
AAATTCCTCAAGTATTTGATTAAACAGAATAATGTAGAAATTCCCTTAACACTTTATACA
TAAGACATTTATGATCAATTTTTATAATCGATTTGTGGATTTTGTTAAAAGATTTGACAT
GAAGATTTATTCGTTGCCATTTTATAATTTTATATGTTTAGTTAAAATTTGACATGAAAA
TTTATTCGACGCCATTTAAAATTTTTACGTGTTAAGTGTTTATGCCTCACAAGTGTTTCC
TTATTCTTTGTTACAGTGCTACATTTTTCTGCTTTCATGGCCTCTAATATTTTCACAAAA
CATAAAAAATTATAACAGCACTTAATTACATTATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGTGTGTGCGCTATCTCAGTGTTTCAGTTTTTCAGCTGGTGGAATACCTATGACAAG
GCAATCAGCTACCTGGCCACGGTGCCCAAGTACCGCATCCAAGCCATGGAGATTGCCAAG
CAGCAGGGATTGCTCAGGAAAGCCAAAGAGAAGGGCAGAAACAAAAAGTCCAAAGAGGAA
ATTCGTGACGAGGAGGAAAACATCATAAAGAACATTATAAAAAGTAAAATAGATATAAAG
GGGGGCTGTCAGAAACCCCAGATACGTGACCTTCTCCTGTTTCAAATCCTCTTAGCTCCT
TTTCATCTGTGCTCATACATAGTCTGGTATTGCCGATGGATCTATAAATTTAACATCAAA
GGCAAAGAATATGGGGAAGAAGAAAGACTATATATCATACGTAAATCTATGAAGATGTCA
CAGTCTCAGTTTGATAGTCTAGAAGACCATCAGAAAGAAACTTTTCTTAAACGGGAGCTT
TGGATAAAGGAGAATTATGAGGTCTACAAAGAGGAACAAAAAGAAGAACTAAAGAAAAAA
TTGGCAAATGACCCTAGATGGAAGAGATATAGGAGATGGATGAAGAATGAAGGGCCTGGA
CGGCTAACATTTGTGGATGACTGAAGATTGCTGGAATGCGACTCTGCCAGACCTTATGTG
ATATTATTTTGATAACGGAATTATTTTAGAAATGTGTGGACTGCTCCTCAGCAGTAACTA
AAATTCCTCAAGTATTTGATTAAACAGAATAATGTAGAAATTCCCTTAACACTTTATACA
TAAGACATTTATGATCAATTTTTATAATCGATTTGTGGATTTTGTTAAAAGATTTGACAT
GAAGATTTATTCGTTGCCATTTTATAATTTTATATGTTTAGTTAAAATTTGACATGAAAA
TTTATTCGACGCCATTTAAAATTTTTACGTGTTAAGTGTTTATGCCTCACAAGTGTTTCC
TTATTCTTTGTTACAGTGCTACATTTTTCTGCTTTCATGGCCTCTAATATTTTCACAAAA
CATAAAAAATTATAACAGCACTTAATTACATTATTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62751791|ref|NP_001015882.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62751791|ref|NP_001015882.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               19-137, - strand, RNAz p=0.638367
               

               
               378-497, - strand, RNAz p=0.532478

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               19-137, - strand, RNAz p=0.638367
               

               
               378-497, - strand, RNAz p=0.532478

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               19-503, gnl|bosTau2|chr8 (55763933-55764417)
               

               
               19-503, gnl|Hg17|chr9 (111491276-111491760)
               

               
               19-503, gnl|Mm7|chr4 (59061436-59061920)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-503, gnl|bosTau2|chr8 (55763933-55764417)
               

               
               19-503, gnl|Hg17|chr9 (111491276-111491760)
               

               
               19-503, gnl|Mm7|chr4 (59061436-59061920)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               lyg (0.399308)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               pgl (0.236967)
               

               
               hea (0.204499)
               

               
               ski (0.146735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.399308)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               pgl (0.236967)
               

               
               hea (0.204499)
               

               
               ski (0.146735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	19-137, - strand, RNAz p=0.638367
	378-497, - strand, RNAz p=0.532478

	19-503, gnl\|bosTau2\|chr8 (55763933-55764417)
	19-503, gnl\|Hg17\|chr9 (111491276-111491760)
	19-503, gnl\|Mm7\|chr4 (59061436-59061920)

	lyg (0.399308)
	vin (0.332557)
	liv (0.292569)
	kid (0.259471)
	pgl (0.236967)
	hea (0.204499)
	ski (0.146735)
	sug (0.127291)
	thg (0.126791)
	cbl (0.114797)
	cty (0.10408)