Ss1.1-rpgl01_f10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCCCCAAATAAGAAATAAAATAATGACATCGTTGAATCTCCCAATTAAACTCCAGTCC AATTCAAAATTCATCTTCAGAGCTGTCGGCTAAGAGCATTACTCGATCTTGCATGCTGTT GAATTCTCTCTGCTTTCTTTTATGCCGTTTGAAGCCATTTCTCCTGCGGCGATTCATAAC CTTAATGCTGTAGAGCGCTCCCAAGATGAACAAGGCTCCAGCTATCCCTACCCCTACTGG CACCAGCATCCCAGACATATAGCCAGCCTTGTCTTTCAGTTTTTCCATCCAGCTTCTCAC CAGGCCCTGATTCTGTTGTTCCCACTCGATGGCATCTGGCACCTGGTAGGTGGCCCCCTC CAAAGGGACCACATTGCCCTGCTCTGAGCCAGGTTCCTGAGACATGAGGCCAGGAAGGGT GAACCCGGGTGGCTCGGTGTCACCACCCAGGCCCTCGTCCAGGGAGTCTGCATCTTTATC TTCCTCATCTTCCTCTTCGTCTTCCTCCTCTTCATCTTCCTCCTCTTCATCCTCTTCATC CTCATCTTCTTCTCCCTCTTCAGATTCGAGTTGGTCCAGGCCATATGAGGCAGCCGTATT AACATAGCTAATAGCTGGAGCTGCAGTTCTCCTCTCAGAAGATGCCTCAGAGTCGGCAAG CGCTGGGGAACTGCTGGGTGCCTCCTCTGTTATTCCAGGGGGCGTCACTGGCGAACCCAA AATTGGTGTGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCCCCAAATAAGAAATAAAATAATGACATCGTTGAATCTCCCAATTAAACTCCAGTCC AATTCAAAATTCATCTTCAGAGCTGTCGGCTAAGAGCATTACTCGATCTTGCATGCTGTT GAATTCTCTCTGCTTTCTTTTATGCCGTTTGAAGCCATTTCTCCTGCGGCGATTCATAAC CTTAATGCTGTAGAGCGCTCCCAAGATGAACAAGGCTCCAGCTATCCCTACCCCTACTGG CACCAGCATCCCAGACATATAGCCAGCCTTGTCTTTCAGTTTTTCCATCCAGCTTCTCAC CAGGCCCTGATTCTGTTGTTCCCACTCGATGGCATCTGGCACCTGGTAGGTGGCCCCCTC CAAAGGGACCACATTGCCCTGCTCTGAGCCAGGTTCCTGAGACATGAGGCCAGGAAGGGT GAACCCGGGTGGCTCGGTGTCACCACCCAGGCCCTCGTCCAGGGAGTCTGCATCTTTATC TTCCTCATCTTCCTCTTCGTCTTCCTCCTCTTCATCTTCCTCCTCTTCATCCTCTTCATC CTCATCTTCTTCTCCCTCTTCAGATTCGAGTTGGTCCAGGCCATATGAGGCAGCCGTATT AACATAGCTAATAGCTGGAGCTGCAGTTCTCCTCTCAGAAGATGCCTCAGAGTCGGCAAG CGCTGGGGAACTGCTGGGTGCCTCCTCTGTTATTCCAGGGGGCGTCACTGGCGAACCCAA AATTGGTGTGAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 133-269, gnl|bosTau2|chr10 (48322173-48322037) | |
| 133-269, gnl|canFam2|chr8 (36444404-36444577) | |
| 133-269, gnl|danRer3|chrNA (109504253-109504404) | |
| 133-269, gnl|dasNov1|scaffold_107634 (4325-4152) | |
| 133-269, gnl|echTel1|scaffold_147780 (71-234) | |
| 133-269, gnl|galGal2|chr5 (52105688-52105515) | |
| 133-269, gnl|hg17|chr14 (57541520-57541693) | |
| 133-269, gnl|Hg17|chr14 (57541519-57541655) | |
| 133-269, gnl|loxAfr1|scaffold_4755 (32131-31959) | |
| 133-269, gnl|mm7|chr14 (45016510-45016689) | |
| 133-269, gnl|Mm7|chr14 (45016509-45016645) | |
| 133-269, gnl|monDom2|scaffold_8 (70032647-70032819) | |
| 133-269, gnl|oryCun1|scaffold_176465 (43932-44081) | |
| 133-269, gnl|panTro1|chr15 (57017327-57017500) | |
| 133-269, gnl|rheMac2|chr7 (121011042-121011215) | |
| 133-269, gnl|rn3|chr15 (25696856-25697042) | |
| 133-269, gnl|tetNig1|chr14 (7143727-7143861) | |
| 133-269, gnl|xenTro1|scaffold_33 (1402155-1401995) | |
| 300-559, gnl|bosTau2|chr10 (48233876-48233620) | |
| 300-559, gnl|canFam2|chr8 (36527285-36527638) | |
| 300-559, gnl|dasNov1|scaffold_24351 (44761-44408) | |
| 300-559, gnl|echTel1|scaffold_169865 (2855-3207) | |
| 300-559, gnl|hg17|chr14 (57633191-57633547) | |
| 300-559, gnl|Hg17|chr14 (57633195-57633454) | |
| 300-559, gnl|loxAfr1|scaffold_5568 (13831-13478) | |
| 300-559, gnl|mm7|chr14 (45085312-45085673) | |
| 300-559, gnl|Mm7|chr14 (45085316-45085581) | |
| 300-559, gnl|monDom2|scaffold_8 (70115580-70115926) | |
| 300-559, gnl|oryCun1|scaffold_81351 (8737-8381) | |
| 300-559, gnl|panTro1|chr15 (57191989-57192345) | |
| 300-559, gnl|rheMac2|chr7 (121103579-121103935) | |
| 300-559, gnl|rn3|chr15 (25764337-25764695) | |
| 300-559, gnl|xenTro1|scaffold_33 (1359833-1359503) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 133-269, gnl|bosTau2|chr10 (48322173-48322037) | |
| 133-269, gnl|canFam2|chr8 (36444404-36444577) | |
| 133-269, gnl|danRer3|chrNA (109504253-109504404) | |
| 133-269, gnl|dasNov1|scaffold_107634 (4325-4152) | |
| 133-269, gnl|echTel1|scaffold_147780 (71-234) | |
| 133-269, gnl|galGal2|chr5 (52105688-52105515) | |
| 133-269, gnl|hg17|chr14 (57541520-57541693) | |
| 133-269, gnl|Hg17|chr14 (57541519-57541655) | |
| 133-269, gnl|loxAfr1|scaffold_4755 (32131-31959) | |
| 133-269, gnl|mm7|chr14 (45016510-45016689) | |
| 133-269, gnl|Mm7|chr14 (45016509-45016645) | |
| 133-269, gnl|monDom2|scaffold_8 (70032647-70032819) | |
| 133-269, gnl|oryCun1|scaffold_176465 (43932-44081) | |
| 133-269, gnl|panTro1|chr15 (57017327-57017500) | |
| 133-269, gnl|rheMac2|chr7 (121011042-121011215) | |
| 133-269, gnl|rn3|chr15 (25696856-25697042) | |
| 133-269, gnl|tetNig1|chr14 (7143727-7143861) | |
| 133-269, gnl|xenTro1|scaffold_33 (1402155-1401995) | |
| 300-559, gnl|bosTau2|chr10 (48233876-48233620) | |
| 300-559, gnl|canFam2|chr8 (36527285-36527638) | |
| 300-559, gnl|dasNov1|scaffold_24351 (44761-44408) | |
| 300-559, gnl|echTel1|scaffold_169865 (2855-3207) | |
| 300-559, gnl|hg17|chr14 (57633191-57633547) | |
| 300-559, gnl|Hg17|chr14 (57633195-57633454) | |
| 300-559, gnl|loxAfr1|scaffold_5568 (13831-13478) | |
| 300-559, gnl|mm7|chr14 (45085312-45085673) | |
| 300-559, gnl|Mm7|chr14 (45085316-45085581) | |
| 300-559, gnl|monDom2|scaffold_8 (70115580-70115926) | |
| 300-559, gnl|oryCun1|scaffold_81351 (8737-8381) | |
| 300-559, gnl|panTro1|chr15 (57191989-57192345) | |
| 300-559, gnl|rheMac2|chr7 (121103579-121103935) | |
| 300-559, gnl|rn3|chr15 (25764337-25764695) | |
| 300-559, gnl|xenTro1|scaffold_33 (1359833-1359503) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| pgl (0.35545) | |
| tes (0.207814) | |
| eye (0.170503) | |
| nmm (0.132802) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.35545) | |
| tes (0.207814) | |
| eye (0.170503) | |
| nmm (0.132802) | |
| ecc (0.115035) | |
| cty (0.10408) |