Non-Coding RNA Search

Ss1.1-rpgl01_f4.5

Sequence:


               
               GCAGGCTGAGATTGTGGAGTCCACAGACAGCGGCTTCGGGCACAGCCGCCTTGTGAAGGA
GAACCTCATGGACTTCCTCATCCCCTTCCTGCCGCTGGAGTACCGTCACGTGAGGCTGTG
TGCCCGCGATGCCTTCCTGAGCCAGGAGCTCCTGTACACGGAGGCGGCCCTGGATGAAAT
TGCCAAGATGATGGTGTACGTCCCCAAGGAGGAACAGCTCTTCTCTTCTCAGGGATGCAA
ATCTATTTCCCAGAGAATTAACTATTTCCTGCCTTGAGGCTAGAAGAAAACTTCCTGAAG
CTGCCTTCCTTCCCCTAAGAGGACCCTAGGGCCTGTTAGCACACAGTCCAGGATGCAAGG
GGTGGGAGGGGCAGGCTAGCATCCAGCAGTCACAAGTACACAAGTGCTGTGTAAAAGGGA
GGCCTTACATCAAGAGGCAGAGCCAACTCTTCAAATCACTTGGTGCCTTAGAGAGCCACA
TTCCAAAATGTGGCCCAGGTGGTTGGAGAAAGCCACATGAGAGACGAATCCCAAGGATTT
ATTAGCTCATCAGCTCTTGCCTAGACTTGGGTTTCCTGGACTTGGGTGTTGGGCCTGAGG
CTGCATATCCTCGGTGACAGGGAAAAGAAAAATGAAGGTCTGCTTACCAGTGGCTGGCAG
TAGACCTCAAGTCTGCAGGCTTGGATGGGTTAGCTTTCAAGTTGTTATTCCCAGAGGCAA
GCTGTGTGAGATCAGCAAAGAGCCTAAGGCTGAAGGAGAGAGTGCACAGAGGAAACTTAC
TTTAAATCAAGTCAGTGTAGGCTAATGCACATCTAAAGCCTTCATTGTGTCATAAGATTA
AAATTTTGTATTTTTCTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGCTGAGATTGTGGAGTCCACAGACAGCGGCTTCGGGCACAGCCGCCTTGTGAAGGA
GAACCTCATGGACTTCCTCATCCCCTTCCTGCCGCTGGAGTACCGTCACGTGAGGCTGTG
TGCCCGCGATGCCTTCCTGAGCCAGGAGCTCCTGTACACGGAGGCGGCCCTGGATGAAAT
TGCCAAGATGATGGTGTACGTCCCCAAGGAGGAACAGCTCTTCTCTTCTCAGGGATGCAA
ATCTATTTCCCAGAGAATTAACTATTTCCTGCCTTGAGGCTAGAAGAAAACTTCCTGAAG
CTGCCTTCCTTCCCCTAAGAGGACCCTAGGGCCTGTTAGCACACAGTCCAGGATGCAAGG
GGTGGGAGGGGCAGGCTAGCATCCAGCAGTCACAAGTACACAAGTGCTGTGTAAAAGGGA
GGCCTTACATCAAGAGGCAGAGCCAACTCTTCAAATCACTTGGTGCCTTAGAGAGCCACA
TTCCAAAATGTGGCCCAGGTGGTTGGAGAAAGCCACATGAGAGACGAATCCCAAGGATTT
ATTAGCTCATCAGCTCTTGCCTAGACTTGGGTTTCCTGGACTTGGGTGTTGGGCCTGAGG
CTGCATATCCTCGGTGACAGGGAAAAGAAAAATGAAGGTCTGCTTACCAGTGGCTGGCAG
TAGACCTCAAGTCTGCAGGCTTGGATGGGTTAGCTTTCAAGTTGTTATTCCCAGAGGCAA
GCTGTGTGAGATCAGCAAAGAGCCTAAGGCTGAAGGAGAGAGTGCACAGAGGAAACTTAC
TTTAAATCAAGTCAGTGTAGGCTAATGCACATCTAAAGCCTTCATTGTGTCATAAGATTA
AAATTTTGTATTTTTCTAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61872266|ref|XP_604560.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61872266|ref|XP_604560.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               183-302, - strand, RNAz p=0.991761

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               183-302, - strand, RNAz p=0.991761

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               24-744, gnl|bosTau2|chr16 (42753766-42754488)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-744, gnl|bosTau2|chr16 (42753766-42754488)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               elu (0.385356)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               fty (0.17584)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               ova (0.129132)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               fty (0.17584)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               ova (0.129132)

	elu (0.385356)
	cbe (0.239234)
	pgl (0.236967)
	fty (0.17584)
	cje (0.165235)
	cag (0.151194)
	ova (0.129132)