Non-Coding RNA Search

Ss1.1-rpgl01_k19.5

Sequence:


               
               CATCTCTGCTGCACGCCCTGCCTTGCCTTACTGGCAAGGCAAACACTGCTTCCTAGAAGA
CTGTAACAGGTTGGCACTGCCACCTTTTCCTGGAAGACCCCTCCAGCCTTGCAGTCCTCC
TTCCTCCATGAGGCTAGCCTTCTGGGATGCACATATGGTCCCCCATTCTGGCAAGGCCAA
TAGCTCTGCCTAGCCTGATAGTGCCTTGCTGCCCAACAGAGTGAAAGGGATTTTTTTTTG
TCTCCATGTTTCCTTCAGAGCCAAGGCCAGTGGCTGAGAGTGAGATGATTAGCTCTGCTT
CCTCATTCACACAAGCATTAAACTCCTACTCTGTGTAGCAAGCTCACCAAACCAAACAAC
AAAAAAGATATACTTTTCCCTCCCCTAGACACCTTCAGTATGGTGGGGGGATCAGATATG
TGCTACAGTCACTGGTAGGAAAGAGGCTGTGACATGTGCAATACAGGAGGCTTAGACAAT
GGGTGGCTCCCTCACTGGAGCATGGGAGAGGGCAGGATGAATTAATTCCAGCAGCAGTGT
CAGAAAGGGCTCCAGGCACCTCCAGAGGTAAGGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCTCTGCTGCACGCCCTGCCTTGCCTTACTGGCAAGGCAAACACTGCTTCCTAGAAGA
CTGTAACAGGTTGGCACTGCCACCTTTTCCTGGAAGACCCCTCCAGCCTTGCAGTCCTCC
TTCCTCCATGAGGCTAGCCTTCTGGGATGCACATATGGTCCCCCATTCTGGCAAGGCCAA
TAGCTCTGCCTAGCCTGATAGTGCCTTGCTGCCCAACAGAGTGAAAGGGATTTTTTTTTG
TCTCCATGTTTCCTTCAGAGCCAAGGCCAGTGGCTGAGAGTGAGATGATTAGCTCTGCTT
CCTCATTCACACAAGCATTAAACTCCTACTCTGTGTAGCAAGCTCACCAAACCAAACAAC
AAAAAAGATATACTTTTCCCTCCCCTAGACACCTTCAGTATGGTGGGGGGATCAGATATG
TGCTACAGTCACTGGTAGGAAAGAGGCTGTGACATGTGCAATACAGGAGGCTTAGACAAT
GGGTGGCTCCCTCACTGGAGCATGGGAGAGGGCAGGATGAATTAATTCCAGCAGCAGTGT
CAGAAAGGGCTCCAGGCACCTCCAGAGGTAAGGCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               4-111, - strand, RNAz p=0.996371

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-111, - strand, RNAz p=0.996371

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-576, gnl|bosTau2|chr3 (9223881-9224431)
               

               
               4-576, gnl|Hg17|chr1 (151922514-151923094)
               

               
               4-576, gnl|Mm7|chr3 (89396222-89395634)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-576, gnl|bosTau2|chr3 (9223881-9224431)
               

               
               4-576, gnl|Hg17|chr1 (151922514-151923094)
               

               
               4-576, gnl|Mm7|chr3 (89396222-89395634)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)
               

               
               med (0.116252)

	4-576, gnl\|bosTau2\|chr3 (9223881-9224431)
	4-576, gnl\|Hg17\|chr1 (151922514-151923094)
	4-576, gnl\|Mm7\|chr3 (89396222-89395634)