Ss1.1-rpgl01_k23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCGTGGTGGTGGGAGGAGGCTCTGCGGGTGTGGAGATGGCTGCAGAGATTAAGACCGAG TACCCAGAGAAAGAGGTCACCCTCATTCACTCCCAAATGGCCCTCGCTGACACGGAGCTC CTGCCCTGTGTCCGGCAGGAAGTAAAGGAGATCCTGCTCCGGAAAGGCGTGCAGCTGCTG CTGAGTGAGCGGGTGAGCAACCTGGAGGGACTGCCTCTCAATGAGTATCAGGAGTGCATC AAGGTCCAGACAGACAAAGGCACGGAGGTAGCCGCCAACCTGGTGATTGTCTGCAACGGC ATCAGGATCAACACTTTGGCCTACCGCAGCGCGCTCGGTGATCGGCTGGCCGGCAGTGGT GCTCTGAGAGTGAACGAGCACCTCCAGGTGGAGGGCTGCAGCCACATCTATGCCATCGGT GACTGCGCCAACGTGAGGGAGCCCAAGATGGCCTATCACGCCGGCCTCCACGCCAGCGTC GCCGTGGCCAACATCGTCAACTCCGTGAAACAGAGGCCTCTGAAAACCTACAAGCCAGGT TCCCTGACATTCCTCCTGGCCATGGGGAGAAATGACGGCGTGGGCCAGATCAGTGGCTTC TACGTGGGGCGGCTCATGGTTCGGCTGGCCAAGAGCCGGGACCTGCTGGTCTCCACAAGT TGGAAAACCATGCGGCAGTCTCCACCCTGAGGGGGAGGCTGGGCAGGAGACAGGATGACC ACCTCACGGAGGCTTCACCCAGGCCTCCATTCCCGAGGACGAGGGCCAGCCAGGCGCCTC TTCTGGAAGCAGGACCTGCCACCTGAGAAACACAGGCCATTCTGTACTATCTGACGGGGG CCTCGCATGGTGGGAGTTGCAGCCCCATTGTGACCGGCCTTTTTCTATTTTAACATTCCA GAAGTTTCCACCCAGGGGGACACAATTGATTCTCCAAACTGAGGAAAATGTTGCAATAAA AGAATATGTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCGTGGTGGTGGGAGGAGGCTCTGCGGGTGTGGAGATGGCTGCAGAGATTAAGACCGAG TACCCAGAGAAAGAGGTCACCCTCATTCACTCCCAAATGGCCCTCGCTGACACGGAGCTC CTGCCCTGTGTCCGGCAGGAAGTAAAGGAGATCCTGCTCCGGAAAGGCGTGCAGCTGCTG CTGAGTGAGCGGGTGAGCAACCTGGAGGGACTGCCTCTCAATGAGTATCAGGAGTGCATC AAGGTCCAGACAGACAAAGGCACGGAGGTAGCCGCCAACCTGGTGATTGTCTGCAACGGC ATCAGGATCAACACTTTGGCCTACCGCAGCGCGCTCGGTGATCGGCTGGCCGGCAGTGGT GCTCTGAGAGTGAACGAGCACCTCCAGGTGGAGGGCTGCAGCCACATCTATGCCATCGGT GACTGCGCCAACGTGAGGGAGCCCAAGATGGCCTATCACGCCGGCCTCCACGCCAGCGTC GCCGTGGCCAACATCGTCAACTCCGTGAAACAGAGGCCTCTGAAAACCTACAAGCCAGGT TCCCTGACATTCCTCCTGGCCATGGGGAGAAATGACGGCGTGGGCCAGATCAGTGGCTTC TACGTGGGGCGGCTCATGGTTCGGCTGGCCAAGAGCCGGGACCTGCTGGTCTCCACAAGT TGGAAAACCATGCGGCAGTCTCCACCCTGAGGGGGAGGCTGGGCAGGAGACAGGATGACC ACCTCACGGAGGCTTCACCCAGGCCTCCATTCCCGAGGACGAGGGCCAGCCAGGCGCCTC TTCTGGAAGCAGGACCTGCCACCTGAGAAACACAGGCCATTCTGTACTATCTGACGGGGG CCTCGCATGGTGGGAGTTGCAGCCCCATTGTGACCGGCCTTTTTCTATTTTAACATTCCA GAAGTTTCCACCCAGGGGGACACAATTGATTCTCCAAACTGAGGAAAATGTTGCAATAAA AGAATATGTTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 74-186, - strand, RNAz p=0.543037 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 74-186, - strand, RNAz p=0.543037 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 74-186, gnl|bosTau2|chr28 (19453715-19453827) | |
| 74-186, gnl|canFam2|chr4 (24301577-24301708) | |
| 74-186, gnl|danRer3|chr20 (12866067-12866180) | |
| 74-186, gnl|dasNov1|scaffold_9960 (18759-18894) | |
| 74-186, gnl|echTel1|scaffold_235282 (706-838) | |
| 74-186, gnl|galGal2|chr6 (11249419-11249282) | |
| 74-186, gnl|hg17|chr10 (71547572-71547706) | |
| 74-186, gnl|Hg17|chr10 (71547684-71547572) | |
| 74-186, gnl|loxAfr1|scaffold_26271 (16732-16865) | |
| 74-186, gnl|mm7|chr10 (61250893-61250743) | |
| 74-186, gnl|Mm7|chr10 (61250779-61250891) | |
| 74-186, gnl|monDom2|scaffold_41 (20494514-20494379) | |
| 74-186, gnl|oryCun1|scaffold_173342 (53592-53458) | |
| 74-186, gnl|panTro1|chr8 (72716282-72716416) | |
| 74-186, gnl|rheMac2|chr9 (66896224-66896090) | |
| 74-186, gnl|rn3|chr20 (29110853-29110700) | |
| 74-186, gnl|tetNig1|chr17 (7716413-7716538) | |
| 74-186, gnl|xenTro1|scaffold_151 (1106677-1106802) | |
| 337-540, gnl|bosTau2|chr28 (19456747-19456950) | |
| 337-540, gnl|Hg17|chr10 (71544883-71544680) | |
| 337-540, gnl|Mm7|chr10 (61253915-61254118) | |
| 712-972, gnl|bosTau2|chr28 (19458710-19458968) | |
| 712-972, gnl|Hg17|chr10 (71542303-71542039) | |
| 712-972, gnl|Mm7|chr10 (61256857-61257105) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 74-186, gnl|bosTau2|chr28 (19453715-19453827) | |
| 74-186, gnl|canFam2|chr4 (24301577-24301708) | |
| 74-186, gnl|danRer3|chr20 (12866067-12866180) | |
| 74-186, gnl|dasNov1|scaffold_9960 (18759-18894) | |
| 74-186, gnl|echTel1|scaffold_235282 (706-838) | |
| 74-186, gnl|galGal2|chr6 (11249419-11249282) | |
| 74-186, gnl|hg17|chr10 (71547572-71547706) | |
| 74-186, gnl|Hg17|chr10 (71547684-71547572) | |
| 74-186, gnl|loxAfr1|scaffold_26271 (16732-16865) | |
| 74-186, gnl|mm7|chr10 (61250893-61250743) | |
| 74-186, gnl|Mm7|chr10 (61250779-61250891) | |
| 74-186, gnl|monDom2|scaffold_41 (20494514-20494379) | |
| 74-186, gnl|oryCun1|scaffold_173342 (53592-53458) | |
| 74-186, gnl|panTro1|chr8 (72716282-72716416) | |
| 74-186, gnl|rheMac2|chr9 (66896224-66896090) | |
| 74-186, gnl|rn3|chr20 (29110853-29110700) | |
| 74-186, gnl|tetNig1|chr17 (7716413-7716538) | |
| 74-186, gnl|xenTro1|scaffold_151 (1106677-1106802) | |
| 337-540, gnl|bosTau2|chr28 (19456747-19456950) | |
| 337-540, gnl|Hg17|chr10 (71544883-71544680) | |
| 337-540, gnl|Mm7|chr10 (61253915-61254118) | |
| 712-972, gnl|bosTau2|chr28 (19458710-19458968) | |
| 712-972, gnl|Hg17|chr10 (71542303-71542039) | |
| 712-972, gnl|Mm7|chr10 (61256857-61257105) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nco (0.161734) | |
| cli (0.152812) | |
| nmm (0.132802) | |
| pgl (0.118483) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| cli (0.152812) | |
| nmm (0.132802) | |
| pgl (0.118483) | |
| eje (0.0988338) |