Non-Coding RNA Search

Ss1.1-rpgl01_n18.5

Sequence:


               
               AACTCTTGTTTTCAGGGTGGACTGTAAATAAAGAAACAGCTTAATTCTGGCTTCAGCTTT
CACCCGGAATTGTTGCCTCTAATAAGGAGAGGGCCCTGGAAGTGCAGAAATAGAGGTCCT
CTTCCAGGACTGCTTTTCCTCCTTTCCATCTCCATTATCTTGCCCAAGCTCAGAATTCTA
AAGACTTCTATAAATGTGTTGGGATTGCAGAAGAGCCTTTTTCTAGACCATGTTGTCTCC
ATCACAAAGAGCATCATGGATTCTTGTGTGGCTCCTGGACTGGGAAGTCCTACAGGGATC
CAGATGGAGCCGTCTCTTTATCCTGAGGAAGGCTTGCTCTTCGGACACCAGGATAGGCTA
AGGTGTGAGGTATCGTCCTCAGGGCTTGTTTTTCCATCTGCTGTGGGGTTCCATCTTGAA
TTTCAGTCGTTGAGCAATGGAACTGAGCAATGGAAGCTGAGGGCTGGCCTTTCCAGTCCT
GTTCAGACTCAGTGTGCTGACTGTAGGATCAGGAAGCAGTGTGACCCCTTTTTAATGTGC
AGGTTTGTGCTTTCAGCTGTTCCTCTTGTAGCCTGACTCTTTTCTCCATCTATTTTATAT
GGTAGGGTGGGAGCAGAATTGTCACCCAGGACACAGGCTCAGCTCTAGTCAGTTTATCAG
CTCCCTAGCAGAAAATGCATGGAGATCTTACTGGATCTTCCTGGGGGAAAGGCTGGGAAC
CTCTGTCTCAGACTTTTCCTCAGAAGAGAGGTTCTGGGTACAAGCCACGCTAGGCATCTT
CACCCTTTAAGGGTGAGGCTGGTATTATAAGTGATCATTTTAATGTTGAATTTAAACCAC
TACTCTGTTTAAGCTAATTTTTTTTTTTTTTTTTTTTAGCTGGCAACTGGAATTTTGAAA
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
AAAAAAAGAGAATATTGCCAGTTGCCAATTCTGGCTGGTCCAAGTGTCAACTTTGTTAGT
GATTGATTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTCTTGTTTTCAGGGTGGACTGTAAATAAAGAAACAGCTTAATTCTGGCTTCAGCTTT
CACCCGGAATTGTTGCCTCTAATAAGGAGAGGGCCCTGGAAGTGCAGAAATAGAGGTCCT
CTTCCAGGACTGCTTTTCCTCCTTTCCATCTCCATTATCTTGCCCAAGCTCAGAATTCTA
AAGACTTCTATAAATGTGTTGGGATTGCAGAAGAGCCTTTTTCTAGACCATGTTGTCTCC
ATCACAAAGAGCATCATGGATTCTTGTGTGGCTCCTGGACTGGGAAGTCCTACAGGGATC
CAGATGGAGCCGTCTCTTTATCCTGAGGAAGGCTTGCTCTTCGGACACCAGGATAGGCTA
AGGTGTGAGGTATCGTCCTCAGGGCTTGTTTTTCCATCTGCTGTGGGGTTCCATCTTGAA
TTTCAGTCGTTGAGCAATGGAACTGAGCAATGGAAGCTGAGGGCTGGCCTTTCCAGTCCT
GTTCAGACTCAGTGTGCTGACTGTAGGATCAGGAAGCAGTGTGACCCCTTTTTAATGTGC
AGGTTTGTGCTTTCAGCTGTTCCTCTTGTAGCCTGACTCTTTTCTCCATCTATTTTATAT
GGTAGGGTGGGAGCAGAATTGTCACCCAGGACACAGGCTCAGCTCTAGTCAGTTTATCAG
CTCCCTAGCAGAAAATGCATGGAGATCTTACTGGATCTTCCTGGGGGAAAGGCTGGGAAC
CTCTGTCTCAGACTTTTCCTCAGAAGAGAGGTTCTGGGTACAAGCCACGCTAGGCATCTT
CACCCTTTAAGGGTGAGGCTGGTATTATAAGTGATCATTTTAATGTTGAATTTAAACCAC
TACTCTGTTTAAGCTAATTTTTTTTTTTTTTTTTTTTAGCTGGCAACTGGAATTTTGAAA
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
AAAAAAAGAGAATATTGCCAGTTGCCAATTCTGGCTGGTCCAAGTGTCAACTTTGTTAGT
GATTGATTTCTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               5-426, gnl|bosTau2|chr11 (10033172-10032752)
               


               
               446-850, gnl|bosTau2|chr11 (10032698-10032295)
               

               
               446-850, gnl|Hg17|chr2 (71325207-71324799)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-426, gnl|bosTau2|chr11 (10033172-10032752)
               


               
               446-850, gnl|bosTau2|chr11 (10032698-10032295)
               

               
               446-850, gnl|Hg17|chr2 (71325207-71324799)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	5-426, gnl\|bosTau2\|chr11 (10033172-10032752)

	446-850, gnl\|bosTau2\|chr11 (10032698-10032295)
	446-850, gnl\|Hg17\|chr2 (71325207-71324799)