Ss1.1-rpgl03_b1.5
|
AGAAAACTTGGTTCAAGATGTTCCTTCCTTGGCTGTTCCCATCTAATCCATTCTGTGTGC
TTTTACTCAGAGCCATGTCCCTTGAATTCTGAAATTGGAAATGGAGCTAGCTTCTCCCCC
TACTCCACCAAGTATATTTTTTTTTTCTGGCTCCTCAAGTACTTAAATATTCCCATCTGC
CTTCCACCCCCGCTCCTGCCTTACCCCTGCGTGCTCTGAAAACTTGGTTTCAGATCAGGC
CAGATTGGGGTCTGTGGGTAAAGAACTCATTCTCCTAGGCCTGGGCACCCACCTTCTCCA
GAACTTCCTATGCACTTTCCTGACACCTGCATGGACAAAAAGATGCAGCTCTAGTTCCCA
AGGGAATGTCATACATGGGTGAGTTTGAAGACAGCAATTCCAAGAATCCCTCCAGCCTGC
CCCACCCTCCACCCCCACAGACACAGCGCTTCCCCAAGCCTACCTGGGGAACTAATGTTC
TCATCCCAAGAACAAGGTGCCTGCCCTAGAGCAAATGCATGAAGAGAGATTTCGCACAGG
ACCCATTTGGCTTCATTAATACTGTCTGATTTTGATCACCCATTTAGCCCTGGCAAAGAG
CAGGCCCTGAAGAAAGGCATTGGAAAGCGAGGGACCCTGGGGACAAGGCATGCAGAAAGG
TGGGAAGGTATGAAAGATGGTGTGCCAACAGTGAGGGCCCTCAGGGATCAGAATCAGAGT
GGGGACCCTACAACCAAAGAAAGGACTCAAGGCCACCATGTCCTTCCTGGCTTAGGCCAG
GATGAGTTTGGACCATGCAAAACCAGAAGTGCTCTTGCACACAGAGCCGAGGGGCCCAGT
ATGTGGGCACGGCAGGCCCTCAGCAGAAGCATGCAATCTAGTGTCCTGCACATGCTCTGC
CATTTCCACCACTAGCATTCAGCTCCCCCTAAAGAGGCCCATGGGAAATCTAGCCAGTCT
GTAAACAGAGAATTCCCCAGTGTTTATCTTAGGCTGTGTTCACCCTCACCTCAACAGCAC
CTTAAATCTAAACAGCTATCTAGGATCTGTACATCAAAACCTGCAACACGTTAGAAACTT
ATATTTAAAAGCAATTCATCATACTGACCAATTTTTAAATGGAAAATATGTAAATATGAA
GTATTCGGGTTTCTTTTTTCTTTTTTTTAAAGAAAAGGAAGTGTACACCGCTCCTCATGT
GCCATTTGTCCTCAGAGGGCGGCTTTACTTTTTTGGTAAAGGAACAAGCTGCTGACCTTG
ACCAGGAGTTCATACATAATTGTTATTACAGAGGAATTGCTATTACTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGAAAACTTGGTTCAAGATGTTCCTTCCTTGGCTGTTCCCATCTAATCCATTCTGTGTGC
TTTTACTCAGAGCCATGTCCCTTGAATTCTGAAATTGGAAATGGAGCTAGCTTCTCCCCC
TACTCCACCAAGTATATTTTTTTTTTCTGGCTCCTCAAGTACTTAAATATTCCCATCTGC
CTTCCACCCCCGCTCCTGCCTTACCCCTGCGTGCTCTGAAAACTTGGTTTCAGATCAGGC
CAGATTGGGGTCTGTGGGTAAAGAACTCATTCTCCTAGGCCTGGGCACCCACCTTCTCCA
GAACTTCCTATGCACTTTCCTGACACCTGCATGGACAAAAAGATGCAGCTCTAGTTCCCA
AGGGAATGTCATACATGGGTGAGTTTGAAGACAGCAATTCCAAGAATCCCTCCAGCCTGC
CCCACCCTCCACCCCCACAGACACAGCGCTTCCCCAAGCCTACCTGGGGAACTAATGTTC
TCATCCCAAGAACAAGGTGCCTGCCCTAGAGCAAATGCATGAAGAGAGATTTCGCACAGG
ACCCATTTGGCTTCATTAATACTGTCTGATTTTGATCACCCATTTAGCCCTGGCAAAGAG
CAGGCCCTGAAGAAAGGCATTGGAAAGCGAGGGACCCTGGGGACAAGGCATGCAGAAAGG
TGGGAAGGTATGAAAGATGGTGTGCCAACAGTGAGGGCCCTCAGGGATCAGAATCAGAGT
GGGGACCCTACAACCAAAGAAAGGACTCAAGGCCACCATGTCCTTCCTGGCTTAGGCCAG
GATGAGTTTGGACCATGCAAAACCAGAAGTGCTCTTGCACACAGAGCCGAGGGGCCCAGT
ATGTGGGCACGGCAGGCCCTCAGCAGAAGCATGCAATCTAGTGTCCTGCACATGCTCTGC
CATTTCCACCACTAGCATTCAGCTCCCCCTAAAGAGGCCCATGGGAAATCTAGCCAGTCT
GTAAACAGAGAATTCCCCAGTGTTTATCTTAGGCTGTGTTCACCCTCACCTCAACAGCAC
CTTAAATCTAAACAGCTATCTAGGATCTGTACATCAAAACCTGCAACACGTTAGAAACTT
ATATTTAAAAGCAATTCATCATACTGACCAATTTTTAAATGGAAAATATGTAAATATGAA
GTATTCGGGTTTCTTTTTTCTTTTTTTTAAAGAAAAGGAAGTGTACACCGCTCCTCATGT
GCCATTTGTCCTCAGAGGGCGGCTTTACTTTTTTGGTAAAGGAACAAGCTGCTGACCTTG
ACCAGGAGTTCATACATAATTGTTATTACAGAGGAATTGCTATTACTA
|
|
gi|61824212|ref|XP_611545.1| |
Protein identifier
|
gi|61824212|ref|XP_611545.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-154, gnl|bosTau2|chr24 (39718227-39718384) |
|
1-154, gnl|Hg17|chr18 (46510758-46510896) |
|
1-154, gnl|Mm7|chr18 (74324223-74324087) |
| |
|
197-489, gnl|bosTau2|chr24 (39718667-39718956) |
|
197-489, gnl|Hg17|chr18 (46510937-46511244) |
|
197-489, gnl|Mm7|chr18 (74324009-74323747) |
| |
|
800-1307, gnl|bosTau2|chr24 (39719569-39720066) |
|
800-1307, gnl|canFam2|chr7 (83852794-83853223) |
|
800-1307, gnl|dasNov1|scaffold_40037 (3673-3215) |
|
800-1307, gnl|echTel1|scaffold_320182 (12522-12062) |
|
800-1307, gnl|hg17|chr18 (46511599-46512038) |
|
800-1307, gnl|Hg17|chr18 (46511598-46512118) |
|
800-1307, gnl|loxAfr1|scaffold_51827 (14814-14363) |
|
800-1307, gnl|mm7|chr18 (74323416-74322962) |
|
800-1307, gnl|monDom2|scaffold_58 (11175835-11176319) |
|
800-1307, gnl|oryCun1|scaffold_179797 (40735-41140) |
|
800-1307, gnl|panTro1|chr17 (43111712-43112151) |
|
800-1307, gnl|rheMac2|chr18 (43831869-43832305) |
|
800-1307, gnl|rn3|chr18 (70780089-70779684) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-154, gnl|bosTau2|chr24 (39718227-39718384) |
|
1-154, gnl|Hg17|chr18 (46510758-46510896) |
|
1-154, gnl|Mm7|chr18 (74324223-74324087) |
| |
|
197-489, gnl|bosTau2|chr24 (39718667-39718956) |
|
197-489, gnl|Hg17|chr18 (46510937-46511244) |
|
197-489, gnl|Mm7|chr18 (74324009-74323747) |
| |
|
800-1307, gnl|bosTau2|chr24 (39719569-39720066) |
|
800-1307, gnl|canFam2|chr7 (83852794-83853223) |
|
800-1307, gnl|dasNov1|scaffold_40037 (3673-3215) |
|
800-1307, gnl|echTel1|scaffold_320182 (12522-12062) |
|
800-1307, gnl|hg17|chr18 (46511599-46512038) |
|
800-1307, gnl|Hg17|chr18 (46511598-46512118) |
|
800-1307, gnl|loxAfr1|scaffold_51827 (14814-14363) |
|
800-1307, gnl|mm7|chr18 (74323416-74322962) |
|
800-1307, gnl|monDom2|scaffold_58 (11175835-11176319) |
|
800-1307, gnl|oryCun1|scaffold_179797 (40735-41140) |
|
800-1307, gnl|panTro1|chr17 (43111712-43112151) |
|
800-1307, gnl|rheMac2|chr18 (43831869-43832305) |
|
800-1307, gnl|rn3|chr18 (70780089-70779684) |
|
cbr (0.639877) |
|
fcc (0.39557) |
|
pgl (0.35545) |
|
fhi (0.339155) |
|
fce (0.271592) |
|
cbe (0.239234) |
|
cmu (0.186393) |
|
thg (0.126791) |
|
bla (0.124347) |
|
cbr (0.639877) |
|
fcc (0.39557) |
|
pgl (0.35545) |
|
fhi (0.339155) |
|
fce (0.271592) |
|
cbe (0.239234) |
|
cmu (0.186393) |
|
thg (0.126791) |
|
bla (0.124347) |
