Non-Coding RNA Search

Ss1.1-rpgl03_b7.5

Sequence:


               
               TGGGGCTTGCTTGTCCCCATCAGTTAGGGGAGAAGGGGTCAAACCAAAGACGGTGGTTTG
TCCCACACAGGGGGACAGGAGTGGAGAGAAGGTAAGGTTGTGTTCCACCTGTTTTTTCCT
GGTAGGGCGGCTTAACCCCTTTTATAAGACCATGGGTGAATCTGGACAGGGAGGTGAAGT
AAGGAAGGGAACGGTCTTGCCCAGATGGCTCTGTGAGGGCAGGAGACAGCTCCATGGCTT
TCTTGGGCTTTGCTAGGCCAGACACTCCTCTATGGGGAGGGGTGGCTAGAGATCTAAGAA
GAGCTGGTAGGAGACAAGGATAGATGAAGGACTAGGCCTGGCCCAGGTATCAGCCCAGCT
GGAGTCAGAGACTGCCTCTGACACCAGCAAAGAGGGCAGGGTGAGAGAGTTCCCCAGGGA
ACTGGACGCAAGCAAGGAGTCCCACTTCCTCTCCTCTGCCCAGTCCTCTTTTCATCTCTC
CAGACTCCGACAATCAAGGGTGAGAGGGTGCAGCAGGTCCCTTGGTTCCCAGTCCAGCCA
GAATCACCAATATGGGTTCCCAGGCCTCAGAGTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGCTTGCTTGTCCCCATCAGTTAGGGGAGAAGGGGTCAAACCAAAGACGGTGGTTTG
TCCCACACAGGGGGACAGGAGTGGAGAGAAGGTAAGGTTGTGTTCCACCTGTTTTTTCCT
GGTAGGGCGGCTTAACCCCTTTTATAAGACCATGGGTGAATCTGGACAGGGAGGTGAAGT
AAGGAAGGGAACGGTCTTGCCCAGATGGCTCTGTGAGGGCAGGAGACAGCTCCATGGCTT
TCTTGGGCTTTGCTAGGCCAGACACTCCTCTATGGGGAGGGGTGGCTAGAGATCTAAGAA
GAGCTGGTAGGAGACAAGGATAGATGAAGGACTAGGCCTGGCCCAGGTATCAGCCCAGCT
GGAGTCAGAGACTGCCTCTGACACCAGCAAAGAGGGCAGGGTGAGAGAGTTCCCCAGGGA
ACTGGACGCAAGCAAGGAGTCCCACTTCCTCTCCTCTGCCCAGTCCTCTTTTCATCTCTC
CAGACTCCGACAATCAAGGGTGAGAGGGTGCAGCAGGTCCCTTGGTTCCCAGTCCAGCCA
GAATCACCAATATGGGTTCCCAGGCCTCAGAGTTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-116, + strand, RNAz p=0.989093

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, + strand, RNAz p=0.989093

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               92-369, + strand, RNAmicro p=0.944144

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               92-369, + strand, RNAmicro p=0.944144

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_014921, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014921, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-576, gnl|bosTau2|chr7 (7652519-7653091)
               

               
               1-576, gnl|Hg17|chr19 (14120650-14120096)
               

               
               1-576, gnl|Mm7|chr8 (82519506-82520046)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr7 (7652519-7653091)
               

               
               1-576, gnl|Hg17|chr19 (14120650-14120096)
               

               
               1-576, gnl|Mm7|chr8 (82519506-82520046)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               pgl (0.118483)

	1-576, gnl\|bosTau2\|chr7 (7652519-7653091)
	1-576, gnl\|Hg17\|chr19 (14120650-14120096)
	1-576, gnl\|Mm7\|chr8 (82519506-82520046)