Ss1.1-rpgl03_d11.5
|
ATCTTGCGTCCCCGCGTGTGTGCGCCTTATCTCAGCTGGTCTGCCCGAGACCTCCTGAGC
GCCAACCCTAGTCCCCCGCGCGACCCCATTTCCACTCCAACAAGGTACAAAAAGGCTCTG
GACGCCGGCGTGGGAGGAGGACGGGAACGGGGGCGGGAAGTGCCCGGAAGGAGCGAGACA
GGGAGGGACAGGGCTGAGGAGAGGAAGGCGATGCGACGGACAGGCGCATCTAGCTGCCAT
CTTGCGTCCCCGCGTGTGTGCGCCTTATCTCAGCTGGTCTGCCCGAGACCTCCTGAGCGC
CAACCCTAGTCCCCCGCGCGACCCCATTTCCACTCCAACAAGATGAAAGAAACTATCATG
AACCAGGAGAAACTCGCCAAACTGCAGGCACAAGTGCGCATTGGTGGGAAAGGAACTGCT
CGCAGAAAGAAGAAGGTGGTTCATAGAACAGCCACAGCAGATGACAAAAAACTTCAGTTC
TCCTTAAAGAAGTTGGGGGTAAACAATATCTCTGGTATTGAAGAGGTGAATATGTTCACA
AACCAAGGAACAGTGATCCATTTTAACAACCCTAAAGTTCAGGCATCTCTGGCAGCAAAC
ACTTTCACCATCACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGCTACCCAGCATC
TTAAACCAGCTTGGTGCAGACAGTCTGACCAGTTTAAGGAGACTGGCTGAAGCTCTGCCC
AAACAATCCGTGGATGGAAAAGCCCCGCTTGCTACTGGAGAGGATGATGATGATGAAGTT
CCAGATCTTGTGGAGAATTTTGATGAGGCTTCCAAGAATGAAGCAAACTGAATTGAGTCA
ACTTCTAAAGGAGATAAAACTTGAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACT
GCTTTTTAAAATTTTGTTTATGGGTCTGATAAAATCTAGATCTCTAATATTTTTAAGCCC
AAGCCCCTGGACACTGCAGCTCTTTTCAGTTTTTGCTTATACACAGTTCATTCTTTGCAG
CTTTAATTAAGCTGAAGAAGCCTGGGAATTAAGTTTGAAACAAAGATTAATAAAGTTCTT
TGCCTAGTATATGGTTTTATTTTTTATTTCATTGATAACTGATTTGTACACAGCAAAATT
GTTTATAGAAAGCTAATCATGACATGTAATATGGCTGATAATCTTGGATGGAATCTGATT
AAAGATCTAAAATGACAGTATAAATAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATCTTGCGTCCCCGCGTGTGTGCGCCTTATCTCAGCTGGTCTGCCCGAGACCTCCTGAGC
GCCAACCCTAGTCCCCCGCGCGACCCCATTTCCACTCCAACAAGGTACAAAAAGGCTCTG
GACGCCGGCGTGGGAGGAGGACGGGAACGGGGGCGGGAAGTGCCCGGAAGGAGCGAGACA
GGGAGGGACAGGGCTGAGGAGAGGAAGGCGATGCGACGGACAGGCGCATCTAGCTGCCAT
CTTGCGTCCCCGCGTGTGTGCGCCTTATCTCAGCTGGTCTGCCCGAGACCTCCTGAGCGC
CAACCCTAGTCCCCCGCGCGACCCCATTTCCACTCCAACAAGATGAAAGAAACTATCATG
AACCAGGAGAAACTCGCCAAACTGCAGGCACAAGTGCGCATTGGTGGGAAAGGAACTGCT
CGCAGAAAGAAGAAGGTGGTTCATAGAACAGCCACAGCAGATGACAAAAAACTTCAGTTC
TCCTTAAAGAAGTTGGGGGTAAACAATATCTCTGGTATTGAAGAGGTGAATATGTTCACA
AACCAAGGAACAGTGATCCATTTTAACAACCCTAAAGTTCAGGCATCTCTGGCAGCAAAC
ACTTTCACCATCACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGCTACCCAGCATC
TTAAACCAGCTTGGTGCAGACAGTCTGACCAGTTTAAGGAGACTGGCTGAAGCTCTGCCC
AAACAATCCGTGGATGGAAAAGCCCCGCTTGCTACTGGAGAGGATGATGATGATGAAGTT
CCAGATCTTGTGGAGAATTTTGATGAGGCTTCCAAGAATGAAGCAAACTGAATTGAGTCA
ACTTCTAAAGGAGATAAAACTTGAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACT
GCTTTTTAAAATTTTGTTTATGGGTCTGATAAAATCTAGATCTCTAATATTTTTAAGCCC
AAGCCCCTGGACACTGCAGCTCTTTTCAGTTTTTGCTTATACACAGTTCATTCTTTGCAG
CTTTAATTAAGCTGAAGAAGCCTGGGAATTAAGTTTGAAACAAAGATTAATAAAGTTCTT
TGCCTAGTATATGGTTTTATTTTTTATTTCATTGATAACTGATTTGTACACAGCAAAATT
GTTTATAGAAAGCTAATCATGACATGTAATATGGCTGATAATCTTGGATGGAATCTGATT
AAAGATCTAAAATGACAGTATAAATAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-228, gnl|bosTau2|chr20 (3573379-3573606) |
|
1-228, gnl|Hg17|chr5 (72830036-72830266) |
|
1-228, gnl|Mm7|chr13 (95386831-95386595) |
| |
|
12-113, gnl|bosTau2|chr14 (40263538-40263640) |
|
12-113, gnl|canFam2|chr17 (34563905-34563974) |
|
12-113, gnl|danRer3|chr5 (34011767-34011835) |
|
12-113, gnl|dasNov1|scaffold_51494 (2897-2827) |
|
12-113, gnl|echTel1|scaffold_230020 (426-496) |
|
12-113, gnl|galGal2|chrUn (133018079-133018031) |
|
12-113, gnl|Hg17|chr3 (102659356-102659255) |
|
12-113, gnl|hg17|chrX (62769705-62769774) |
|
12-113, gnl|loxAfr1|scaffold_15700 (68757-68827) |
|
12-113, gnl|mm7|chr1 (97801544-97801474) |
|
12-113, gnl|Mm7|chr1 (97801563-97801462) |
|
12-113, gnl|monDom2|scaffold_3 (67480642-67480719) |
|
12-113, gnl|oryCun1|scaffold_193930 (58387-58330) |
|
12-113, gnl|panTro1|chrX (64563423-64563492) |
|
12-113, gnl|rheMac2|chrX (62618648-62618717) |
|
12-113, gnl|rn3|chr13 (94133725-94133795) |
| |
|
250-1089, gnl|bosTau2|chr14 (40263538-40264372) |
|
250-1089, gnl|Hg17|chr3 (102659356-102658519) |
|
250-1089, gnl|Mm7|chr1 (97801563-97800734) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-228, gnl|bosTau2|chr20 (3573379-3573606) |
|
1-228, gnl|Hg17|chr5 (72830036-72830266) |
|
1-228, gnl|Mm7|chr13 (95386831-95386595) |
| |
|
12-113, gnl|bosTau2|chr14 (40263538-40263640) |
|
12-113, gnl|canFam2|chr17 (34563905-34563974) |
|
12-113, gnl|danRer3|chr5 (34011767-34011835) |
|
12-113, gnl|dasNov1|scaffold_51494 (2897-2827) |
|
12-113, gnl|echTel1|scaffold_230020 (426-496) |
|
12-113, gnl|galGal2|chrUn (133018079-133018031) |
|
12-113, gnl|Hg17|chr3 (102659356-102659255) |
|
12-113, gnl|hg17|chrX (62769705-62769774) |
|
12-113, gnl|loxAfr1|scaffold_15700 (68757-68827) |
|
12-113, gnl|mm7|chr1 (97801544-97801474) |
|
12-113, gnl|Mm7|chr1 (97801563-97801462) |
|
12-113, gnl|monDom2|scaffold_3 (67480642-67480719) |
|
12-113, gnl|oryCun1|scaffold_193930 (58387-58330) |
|
12-113, gnl|panTro1|chrX (64563423-64563492) |
|
12-113, gnl|rheMac2|chrX (62618648-62618717) |
|
12-113, gnl|rn3|chr13 (94133725-94133795) |
| |
|
250-1089, gnl|bosTau2|chr14 (40263538-40264372) |
|
250-1089, gnl|Hg17|chr3 (102659356-102658519) |
|
250-1089, gnl|Mm7|chr1 (97801563-97800734) |
|
med (2.20879) |
|
cst (1.96051) |
|
spl (1.8614) |
|
mcp (1.70648) |
|
csk (1.54821) |
|
sme (1.52718) |
|
thg (1.52149) |
|
sin (1.39958) |
|
ssp (1.3552) |
|
fat (1.32685) |
|
nco (1.29387) |
|
ldo (1.26103) |
|
bla (1.24347) |
|
gul (1.24312) |
|
ill (1.22915) |
|
aor (1.17165) |
|
nep (1.10355) |
|
ski (1.02715) |
|
pro (1.02407) |
|
ste (0.946458) |
|
tbr (0.925069) |
|
ece (0.917221) |
|
eje (0.889504) |
|
fty (0.879198) |
|
pty (0.856287) |
|
lnt (0.853849) |
|
mas (0.84122) |
|
cga (0.837287) |
|
fce (0.814775) |
|
col (0.780031) |
|
elu (0.770713) |
|
tra (0.738552) |
|
rec (0.692281) |
|
ecc (0.690211) |
|
nca (0.684369) |
|
lyg (0.665513) |
|
cki (0.660939) |
|
ova (0.645661) |
|
nms (0.641574) |
|
mga (0.64082) |
|
sug (0.636456) |
|
ese (0.632511) |
|
hea (0.613497) |
|
fcc (0.593354) |
|
pgl (0.592417) |
|
cte (0.58548) |
|
nlu (0.575043) |
|
spc (0.566829) |
|
che (0.545256) |
|
sto (0.539471) |
|
cut (0.509771) |
|
nje (0.49776) |
|
cje (0.495704) |
|
eep (0.490256) |
|
cly (0.482567) |
|
eru (0.480192) |
|
clu (0.478583) |
|
mgp (0.461361) |
|
cag (0.453583) |
|
liv (0.438853) |
|
hlv (0.417769) |
|
amn (0.417711) |
|
pla (0.401016) |
|
cov (0.396458) |
|
kid (0.389206) |
|
cmu (0.372787) |
|
sag (0.36543) |
|
mgm (0.360685) |
|
ton (0.351) |
|
fbs (0.350693) |
|
duo (0.345602) |
|
jca (0.34188) |
|
eye (0.341006) |
|
nbm (0.297974) |
|
lin (0.291206) |
|
nmm (0.265604) |
|
ret (0.257467) |
|
tes (0.207814) |
|
jej (0.197844) |
|
csp (0.161186) |
|
eli (0.151814) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
ute (0.132784) |
|
ebs (0.118301) |
|
cbl (0.114797) |
|
cty (0.10408) |
|
med (2.20879) |
|
cst (1.96051) |
|
spl (1.8614) |
|
mcp (1.70648) |
|
csk (1.54821) |
|
sme (1.52718) |
|
thg (1.52149) |
|
sin (1.39958) |
|
ssp (1.3552) |
|
fat (1.32685) |
|
nco (1.29387) |
|
ldo (1.26103) |
|
bla (1.24347) |
|
gul (1.24312) |
|
ill (1.22915) |
|
aor (1.17165) |
|
nep (1.10355) |
|
ski (1.02715) |
|
pro (1.02407) |
|
ste (0.946458) |
|
tbr (0.925069) |
|
ece (0.917221) |
|
eje (0.889504) |
|
fty (0.879198) |
|
pty (0.856287) |
|
lnt (0.853849) |
|
mas (0.84122) |
|
cga (0.837287) |
|
fce (0.814775) |
|
col (0.780031) |
|
elu (0.770713) |
|
tra (0.738552) |
|
rec (0.692281) |
|
ecc (0.690211) |
|
nca (0.684369) |
|
lyg (0.665513) |
|
cki (0.660939) |
|
ova (0.645661) |
|
nms (0.641574) |
|
mga (0.64082) |
|
sug (0.636456) |
|
ese (0.632511) |
|
hea (0.613497) |
|
fcc (0.593354) |
|
pgl (0.592417) |
|
cte (0.58548) |
|
nlu (0.575043) |
|
spc (0.566829) |
|
che (0.545256) |
|
sto (0.539471) |
|
cut (0.509771) |
|
nje (0.49776) |
|
cje (0.495704) |
|
eep (0.490256) |
|
cly (0.482567) |
|
eru (0.480192) |
|
clu (0.478583) |
|
mgp (0.461361) |
|
cag (0.453583) |
|
liv (0.438853) |
|
hlv (0.417769) |
|
amn (0.417711) |
|
pla (0.401016) |
|
cov (0.396458) |
|
kid (0.389206) |
|
cmu (0.372787) |
|
sag (0.36543) |
|
mgm (0.360685) |
|
ton (0.351) |
|
fbs (0.350693) |
|
duo (0.345602) |
|
jca (0.34188) |
|
eye (0.341006) |
|
nbm (0.297974) |
|
lin (0.291206) |
|
nmm (0.265604) |
|
ret (0.257467) |
|
tes (0.207814) |
|
jej (0.197844) |
|
csp (0.161186) |
|
eli (0.151814) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
ute (0.132784) |
|
ebs (0.118301) |
|
cbl (0.114797) |
|
cty (0.10408) |
