Non-Coding RNA Search

Ss1.1-rpgl03_d5.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTTCTCCAACAGATTTATTTTTTCTTTA
AAGGAATGGTTTTTGAAGAGAAAACACATGGGGCAGAGAGGTATGGAATAGAAAATAAAT
ACAAATGTAAGCTGTTTTGCTAATTGCTTTATAACCACAACAAGTTAGCACACAGAAGGC
CCTGTACAAAGCAACACAATAAAGGTTCAAAGATTCGAGGTGTTCCCTTAGGCAAGGCTG
AAGATTTCAGTCTCTGGTATTTGGAATTTAGGCTGCAGTCCTTATTTTTGGATGGATCAC
TGGGTGTGTGGCATAGTCCATGCTCTTAACCAGATTTGAACAGGAGAATGGCCACCTGGC
CCAGGTAGAAGTAGATGAAGTGTTTGGTTTCATGTGTCACGTAACTACCGAAGTTCCTCC
CCACAATGCAGTGCCAAGTGGGGTTGTACTTCTTGTCAAACTCCTTCTTGATATGGGCCG
CAATGTCCTTCTCTATATTATATTTCTCCAGTGCCTGAGTAGCACACTCCACCGAATCCT
GTTGCATCTCCTCCGACATATCGGCATTTTTGATCACGGCCTTTCGGTCACACATGGTTA
CCAAGTAGCAGCGGCTGGCCGACTGCAACGGTCTCCTGGGGGAGGGGCTGCGGAGGATCA
GACCCGTCGGGAGAGGCGGTCGCTACCGAAGCCGTGGCGCATCTAAGCAGCCCCACTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTTCTCCAACAGATTTATTTTTTCTTTA
AAGGAATGGTTTTTGAAGAGAAAACACATGGGGCAGAGAGGTATGGAATAGAAAATAAAT
ACAAATGTAAGCTGTTTTGCTAATTGCTTTATAACCACAACAAGTTAGCACACAGAAGGC
CCTGTACAAAGCAACACAATAAAGGTTCAAAGATTCGAGGTGTTCCCTTAGGCAAGGCTG
AAGATTTCAGTCTCTGGTATTTGGAATTTAGGCTGCAGTCCTTATTTTTGGATGGATCAC
TGGGTGTGTGGCATAGTCCATGCTCTTAACCAGATTTGAACAGGAGAATGGCCACCTGGC
CCAGGTAGAAGTAGATGAAGTGTTTGGTTTCATGTGTCACGTAACTACCGAAGTTCCTCC
CCACAATGCAGTGCCAAGTGGGGTTGTACTTCTTGTCAAACTCCTTCTTGATATGGGCCG
CAATGTCCTTCTCTATATTATATTTCTCCAGTGCCTGAGTAGCACACTCCACCGAATCCT
GTTGCATCTCCTCCGACATATCGGCATTTTTGATCACGGCCTTTCGGTCACACATGGTTA
CCAAGTAGCAGCGGCTGGCCGACTGCAACGGTCTCCTGGGGGAGGGGCTGCGGAGGATCA
GACCCGTCGGGAGAGGCGGTCGCTACCGAAGCCGTGGCGCATCTAAGCAGCCCCACTCCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|16758016|ref|NP_445771.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16758016|ref|NP_445771.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-466, gnl|bosTau2|chr10 (32736400-32735945)
               

               
               7-466, gnl|Hg17|chr12 (119399035-119398600)
               

               
               7-466, gnl|Mm7|chr19 (28462712-28463143)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-466, gnl|bosTau2|chr10 (32736400-32735945)
               

               
               7-466, gnl|Hg17|chr12 (119399035-119398600)
               

               
               7-466, gnl|Mm7|chr19 (28462712-28463143)

Expressed library(ies): 69 entry(ies)

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Expressed library(ies): 69 entry(ies)

Help | Less info


               
               ova (1.42045)
               

               
               fce (1.35796)
               

               
               tes (1.24688)
               

               
               fbs (1.22742)
               

               
               ese (1.13852)
               

               
               spc (1.02029)
               

               
               fcc (0.988924)
               

               
               fty (0.879198)
               

               
               sin (0.874738)
               

               
               eye (0.852515)
               

               
               fhi (0.847889)
               

               
               pgl (0.829384)
               

               
               hyp (0.714184)
               

               
               gul (0.710353)
               

               
               fco (0.628832)
               

               
               hea (0.613497)
               

               
               sme (0.610874)
               

               
               isp (0.601504)
               

               
               lin (0.582411)
               

               
               nlu (0.575043)
               

               
               ton (0.526501)
               

               
               duo (0.518403)
               

               
               thg (0.507164)
               

               
               csp (0.483559)
               

               
               eru (0.480192)
               

               
               ebs (0.473205)
               

               
               ecc (0.46014)
               

               
               ski (0.440205)
               

               
               che (0.408942)
               

               
               fli (0.405762)
               

               
               pla (0.401016)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               nep (0.36785)
               

               
               eep (0.367692)
               

               
               med (0.348756)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               cag (0.302389)
               

               
               eje (0.296501)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               cst (0.280073)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               nca (0.273748)
               

               
               cov (0.264306)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

Expressed library(ies): 69 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (1.42045)
               

               
               fce (1.35796)
               

               
               tes (1.24688)
               

               
               fbs (1.22742)
               

               
               ese (1.13852)
               

               
               spc (1.02029)
               

               
               fcc (0.988924)
               

               
               fty (0.879198)
               

               
               sin (0.874738)
               

               
               eye (0.852515)
               

               
               fhi (0.847889)
               

               
               pgl (0.829384)
               

               
               hyp (0.714184)
               

               
               gul (0.710353)
               

               
               fco (0.628832)
               

               
               hea (0.613497)
               

               
               sme (0.610874)
               

               
               isp (0.601504)
               

               
               lin (0.582411)
               

               
               nlu (0.575043)
               

               
               ton (0.526501)
               

               
               duo (0.518403)
               

               
               thg (0.507164)
               

               
               csp (0.483559)
               

               
               eru (0.480192)
               

               
               ebs (0.473205)
               

               
               ecc (0.46014)
               

               
               ski (0.440205)
               

               
               che (0.408942)
               

               
               fli (0.405762)
               

               
               pla (0.401016)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               nep (0.36785)
               

               
               eep (0.367692)
               

               
               med (0.348756)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               cag (0.302389)
               

               
               eje (0.296501)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               cst (0.280073)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               nca (0.273748)
               

               
               cov (0.264306)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

	7-466, gnl\|bosTau2\|chr10 (32736400-32735945)
	7-466, gnl\|Hg17\|chr12 (119399035-119398600)
	7-466, gnl\|Mm7\|chr19 (28462712-28463143)

	ova (1.42045)
	fce (1.35796)
	tes (1.24688)
	fbs (1.22742)
	ese (1.13852)
	spc (1.02029)
	fcc (0.988924)
	fty (0.879198)
	sin (0.874738)
	eye (0.852515)
	fhi (0.847889)
	pgl (0.829384)
	hyp (0.714184)
	gul (0.710353)
	fco (0.628832)
	hea (0.613497)
	sme (0.610874)
	isp (0.601504)
	lin (0.582411)
	nlu (0.575043)
	ton (0.526501)
	duo (0.518403)
	thg (0.507164)
	csp (0.483559)
	eru (0.480192)
	ebs (0.473205)
	ecc (0.46014)
	ski (0.440205)
	che (0.408942)
	fli (0.405762)
	pla (0.401016)
	ret (0.3862)
	elu (0.385356)
	sug (0.381874)
	nep (0.36785)
	eep (0.367692)
	med (0.348756)
	cje (0.330469)
	nco (0.323468)
	cag (0.302389)
	eje (0.296501)
	fat (0.294855)
	cte (0.29274)
	cst (0.280073)
	cga (0.279096)
	hlv (0.278513)
	nca (0.273748)
	cov (0.264306)
	tra (0.246184)
	cly (0.241284)
	ece (0.229305)
	jca (0.22792)
	nms (0.213858)
	mas (0.210305)
	nbm (0.198649)
	jej (0.197844)
	aor (0.195274)
	ldo (0.194005)
	ill (0.175593)
	cut (0.169924)
	eli (0.151814)
	pty (0.142714)
	csk (0.140746)
	ssp (0.13552)
	ste (0.135208)
	lyg (0.133103)
	ute (0.132784)
	bla (0.124347)
	clu (0.119646)